Conserved Protein Domain Family
Rrp4

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COG1097: Rrp4 (this model, PSSM-Id:224022 is obsolete and has been replaced by 440714)
Exosome complex RNA-binding protein Rrp4, contains S1 and KH domains [Translation, ribosomal structure and biogenesis]
Statistics
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PSSM-Id: 224022
Aligned: 17 rows
Threshold Bit Score: 191.787
Created: 7-Oct-2002
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
731671    45 ASKSESDSQIVTPGELVTDDPIWMRGHGTYF--LDNMTYSSVAGTVSRVNRLLSVIPLKG-RYAPETGDHVVGRIAEVGN 121 baker's yeast
19173243   1 ---MLSKIRNVLPGDEVPSGGSRSLG--IHG------NRASVVGSLCRVSNHLFVVSKTN-RYQPCIDDIVIGKVVLTSQ 68  Encephalitozoon cun...
19074743   1 ------MKTLLLPGEDVLESEGYIRGHGTQL--RGSCIASTYFGRPRITNKLVTVDPMFPlKYSPEVGDVVVGRVIGIHN 72  Encephalitozoon cun...
20093820   4 FELYVEDRQVVTPGE-LLARGQVIASEGTYT--SGDEVYSKVTGLVDIDGRRIRVIPLAG-PYRPSPGDFVVGIVEEVKF 79  Methanopyrus kandle...
15678711   1 -MLLVNEKDLVVPGQ-VLAENEYFPGRGTFK--EDNRICSSFVGLVSVRNKKINVIPLQS-KYIPKRGDVVIGEITDIRF 75  Methanothermobacter...
14520825   2 KRIFVQNRELVVPGT-LLAQGPYKNGRGTFR--EGSRIYSTVIGLVDIKGNTIRVIPLEG-PYIPEVGDNVIGKIVDVKF 77  Pyrococcus abyssi
18313179   1 -MYYVTPRQLVFPGDVIATADSKVEG-PVYL--DNGKYRSLVVGLVEFREDVVVVVPLEG-TYKPKKGDLVIGYVTDVLA 75  Pyrobaculum aerophilum
14591334   2 KRIFVQNRELVVPGT-LLAQGPYKNGRGTFR--EGSRIYSTVIGLVDIKGNTIRVIPLEG-PYIPEVGDNVIGKIVDVKF 77  Pyrococcus horikoshii
1175376   48 EFDKSIHQNLVTPGQLVTDDPQFMRGHGTYF--EDGGIYASVAGSVQRVNKLISVKPLRS-KYVPEIGDLIIGKIAEVQP 124 fission yeast
15897637   7 QKIVLQPRSIVVPGE-LLAEGEFQIPWSPYIlkINSKYYSTVVGLFDVKDTQFEVIPLEGsFYYPKINDIVIGLVEDVEI 85  Sulfolobus solfatar...
731671   122 KRWKVDIGGKQHAVLMLGSVnlpggiLRRKSESDELQMRSFLKEGDLLNAEVQSLFQDGSASLHT----RSLKYGKLRNG 197 baker's yeast
19173243  69 DMHKVDLGGTVGALPSLSFT------------NATKRNKPEVSKGDHLLCKIVRMGTEPLLTCVG------EGFGKLK-G 129 Encephalitozoon cun...
19074743  73 KKWKMELNSKADVYLGLSAInlpgtvQRRKQESDEISMRDFFEIDDLVVSEVQKVGRNGVAALHT----RSDKYGKLGPG 148 Encephalitozoon cun...
20093820  80 SSWLIDVRAPLPAILHVSNA------LEEEVDLIETDLSRYYRPGDVITAVVREVDPVQRVELSLleddAPTRLGRLQGG 153 Methanopyrus kandle...
15678711  76 SMWGLDINSPYTGLLPASEV------FGKD----KRELESVFDIVDVLLLRVVDVDEVKKVKLGL----KGRGLGKFRDG 141 Methanothermobacter...
14520825  78 SSWVVDIGAPYPANLKIQDF------TDEKIDLLRTDLRKFFDIGDIIYAKVKAITEVNNIDLTTk--gMPFNGGPLKGG 149 Pyrococcus abyssi
18313179  76 TGWEVDVRSFMPAYLPVGEA------LHRHVDLETTPLTTFLNIGDVVVAKVKDVDLTDEYPIILt--lKDEKVGKVESG 147 Pyrobaculum aerophilum
14591334  78 SSWVVDIGAPYLANLKIQDF------TDEKIDLLRTDLRKFFDIGDIIYGKVKAITEVNNIDLTTk--gMPFNGGPLKGG 149 Pyrococcus horikoshii
1175376  125 KRWKVDIGAKQNAVLMLSSInlpggiQRRKLETDELQMRSFFQEGDLLVAEVQQYFSDGSVSIHT----RSLKYGKLRNG 200 fission yeast
15897637  86 YGWVVDIKAPYKAYLPASNL------LGRSIN-VGEDLRRYLDVGDYVIARIENFDRSIDPVLSV----KGKDLGRVSNG 154 Sulfolobus solfatar...
731671   198 MFCQVPSSLIVR-AKNHTHNLP------GNITVVLGVNGYIWLRKTSQMdlardtpsannsssikstgptgavslnpsit 270 baker's yeast
19173243 130 AVLPLSPWKVRLlYLSDTLSIVgk---kYRFRIALGLNGFVWIDAEKD-------------------------------- 174 Encephalitozoon cun...
19074743 149 LLVFVPHFLLEP-LKTRFLSNG-------SVEVIVGCNGYIWVGRGCKD------------------------------- 189 Encephalitozoon cun...
20093820 154 QVVEIDPVKVPR-VIGRKGSMIkmlkrvLGCDIVVGANGRIYVRAREEPkk----------------------------- 203 Methanopyrus kandle...
15678711 142 ILVYITPTKVPR-LIGKRGSMInmvkekTHCDIVVGQNGVVWIKGEPD-------------------------------- 188 Methanothermobacter...
14520825 150 QIVKITPSRVPR-VIGRGGSMInmikklTMTRIIVGQNGWIWVSGKNDa------------------------------- 197 Pyrococcus abyssi
18313179 148 TVVEITPVKVPR-VIGKRGSMLntl-meLGCDIVVGQNGRIWVKCKDPR------------------------------- 194 Pyrobaculum aerophilum
14591334 150 QIVKITPSRVPR-VIGRGGSMInmikklTMTRIIVGQNGWIWVNGKNEa------------------------------- 197 Pyrococcus horikoshii
1175376  201 VFLKVPPALVVR-SKSHAYALA------GGVDIILSVNGYVWVSKhnenqhs-----------------------svsit 250 fission yeast
15897637 155 IVIDIMPVKVPR-VIGKNKSMYetltskSGCSIFVANNGRIWATCPSRf------------------------------- 202 Sulfolobus solfatar...
731671   271 rLEEESSWQIYSDENDPSISNNIRQAICRYANVIk----------------ALAFCEIGITQ 316 baker's yeast
19173243 175 --TDVRDIYHYLLHEDG--------------------------------------------- 189 Encephalitozoon cuniculi
19074743 190 -SSTFTEITSVVSGIKAMVSQNKRVNVERLLKKTp--------------------------- 223 Encephalitozoon cuniculi
20093820 204 eRELLAVRAIREIERRSHLRGLTDWLKAN-LKRLs----------------RW--------- 239 Methanopyrus kandleri AV19
15678711 189 -MERIAEKVVLMIDREAHTSGLTDRVRELLDRLTgvepeiqveesegtekpETPESEDFEEA 249 Methanothermobacter thermautotrophicu...
14520825 198 -LEKLAIEAILKIDKESHTRGLTDRIKALLLSRLq----------------ELKEKGVIEEI 242 Pyrococcus abyssi
18313179 195 -DEVFLASLIRKIEAESHVMGLTDRIRAEIEN--------------------YKTSKQQGTV 235 Pyrobaculum aerophilum
14591334 198 -LEKLAIEAILKIDRESHTKGLTDRIKSLLLSRLq----------------ELKEKGVIEEI 242 Pyrococcus horikoshii
1175376  251 rLEEEASESIYSNENDE-IDGYTRLNISRVSICIk----------------GLASRSLPLTQ 295 fission yeast
15897637 203 -SEEILIEAIRKIENESHIKGLTDRIKQFIEEKLg---------------eRNASSGETKTN 248 Sulfolobus solfataricus
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