1QDN,1R7R,1CR5,1CZ4


Conserved Protein Domain Family
CDC48_2

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smart01072: CDC48_2 
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Cell division protein 48 (CDC48) domain 2
This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at the C-terminus. The VAT-N domain found in AAA ATPases is a substrate 185-residue recognition domain.
Statistics
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PSSM-Id: 215011
Aligned: 106 rows
Threshold Bit Score: 33.7266
Created: 12-Jul-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1QDN_A    112 PYDTdkMAAEFIQQFNNQAFSVGQQLVFSFNDkLFGLLVKDIE--------AMdPSIL-KGEpasg------krqkIEVG 176 Chinese hamster
XP_571385 226 IFDSeeMAAAFINAFPSLPLTPLQPLVFDYRGhELKATVRAIS--------TLdGQDGrTGVtm----------egTEII 287 Cryptococcus neofo...
NP_192400 118 QVDAalLSTQLKRKYTNQVLTVGQKATFEYHG--TNYILTVNR--------ADvEGQDhTNG--------------IERG 173 thale cress
XP_757431 214 AYDTdeMAKRFTRAFENHIFTVGQLLVFEFKGmnMKAVVTGVD--------VVeLHEIqGGNnappgkhgashqsqSDRG 285 Ustilago maydis 521
XP_504542 177 SFEPekLAHHFLHQYANQIFTPGQTLAMDFEGlnFQIRVLSTS--------VVn----lGdagg--------vaarNVRG 236 Yarrowia lipolytic...
NP_594690 163 PFDGeeMAKLFCSSYQSQVFSPGQKIVFDFRSynIKATVRTIS--------CVdL--LiGENqdaen-----tadtSKRG 227 Schizosaccharomyce...
XP_391079 188 PYDEdeLSKMFIETYQNQVLAPGQRILMDHRNipLLIVVKTVS--------LTdLA-MtSDDsskka-----qrepHARG 253 Gibberella zeae PH-1
EGO56951  218 PYDQdeLAKVFLKTFQNQVFAPGQRFLLDVKNipLAVMVKTVT--------LVdLT-MlGSGeapt------rsdpGARG 282 Neurospora tetrasp...
XP_754370 135 PYDQdeLANAVVKNFENQIFSPGQKILMDHKSipLLLTVKTVQ--------RVdLT-SeKAGatags----tetdpTARG 201 Aspergillus fumiga...
1CR5_A    112 vFDQdeLAKQFVRCYESQIFSPTQYLIMEFQGhFFDLKIRNVQaidlgdiePT-SAVAtGIE--------------TK-G 175 baker's yeast
1QDN_A    177 LVVGNSQ 183 Chinese hamster
XP_571385 288 WVKDPTS 294 Cryptococcus neoformans var. neoformans JEC21
NP_192400 174 LLSKDTY 180 thale cress
XP_757431 286 ILIAQTQ 292 Ustilago maydis 521
XP_504542 237 ILVRHTD 243 Yarrowia lipolytica CLIB122
NP_594690 228 LLTSQTE 234 Schizosaccharomyces pombe 972h-
XP_391079 254 ILTTQSQ 260 Gibberella zeae PH-1
EGO56951  283 ILTNQAS 289 Neurospora tetrasperma FGSC 2508
XP_754370 202 ILTRHTQ 208 Aspergillus fumigatus Af293
1CR5_A    176 ILTKQTQ 182 baker's yeast
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