1UVQ,3LQZ,2BC4,1K8I


Conserved Protein Domain Family
MHC_II_alpha

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smart00920: MHC_II_alpha 
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Class II histocompatibility antigen, alpha domain
Class II MHC glycoproteins are expressed on the surface of antigen-presenting cells (APC), including macrophages, dendritic cells and B cells. MHC II proteins present peptide antigens that originate extracellularly from foreign bodies such as bacteria. Proteins from the pathogen are degraded into peptide fragments within the APC, which sequesters these fragments into the endosome so they can bind to MHC class II proteins, before being transported to the cell surface. MHC class II receptors display antigens for recognition by helper T cells (stimulate development of B cell clones) and inflammatory T cells (cause the release of lymphokines that attract other cells to site of infection).
Statistics
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PSSM-Id: 214913
Aligned: 41 rows
Threshold Bit Score: 75.3569
Created: 12-Jul-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1UVQ_A          7 VasCGVNLYQf-YGPSG------QYTHEFDGDEQFYVDLERKETAWRWPEFS---K---FGGFdPQGA----LRNMAVAK 69   human
CAF91234       21 E--DVHIRGCsdFD--G------EDMYGLDGEERWYADFKRGEGVYALPDFV---DplkFPEGtYSQA----VADQQICK 83   spotted green...
CAF90147       21 E--DIRIVGCsdFD--G------EYMYGLDGEELWYADFRRGEGVYAQPDFI---DplkYAEDpYSLA----VATLQMCK 83   spotted green...
NP_001007206   21 VheDFAIRGCsdT--EK------EDTYGMDEEELWHADFNQKKGVETLPDFG---DpmtFPGF-YEGS----EGEMAVCK 84   zebrafish
BAH30162       22 E--DIRILGCsdLD--G------EFMYGLDSEEVWYADFSKGEGVDINPPFI---DpitYEEGaYSSA----VADLQTCK 84   torafugu
NP_001092896   21 ehkDFGFVGCsdM--EK------EFLFGFDGEELFHLDFIRKEGVATAPDFA---DplsFPGF-YEAG----VAQMEVCK 84   zebrafish
XP_002942060   28 shiLRQVLFCqpQSPSP------VLLKMFDDEQMFQYSFADKSVVPRIPDFN---K---WTSQeVFSSseflAFDEELCT 95   western clawe...
AEC52935       20 lhtLSEVLFCqpDTPSL------GLSVAFDSEQLFSFDVPNSQWLPQLPDGP---S---WP-AdIEQPhe-lLHDAALCR 85   chicken
AAI08050       24 N--LFMFSGCsdTEKEa--------LYGPEGEEMWHSDFKLKQGVATLPEFAdplS---FPGA-YEES----VADQEVCK 85   zebrafish
XP_001333638   28 VhdYFSIHGCsyTDEEGmqavdgEDMHGIDNEEMWHADYNLKTGVLSLPDFG---DpitFPRF-YETS----VIEMTGCK 99   zebrafish
1UVQ_A         70 HNLNIMIKRYNSTAAT 85   human
CAF91234       84 INLGISRKGNKDMPRE 99   spotted green pufferfish
CAF90147       84 FNLGIFRKGYKDMPRE 99   spotted green pufferfish
NP_001007206   85 SNLALRIKGFKSPPPE 100  zebrafish
BAH30162       85 TSLDITRKSLKDMPPE 100  torafugu
NP_001092896   85 QNLATDIRAYNSPQEq 100  zebrafish
XP_002942060   96 ESMENFTKAVVDITPE 111  western clawed frog
AEC52935       86 ELLDLLTRIATGPNPm 101  chicken
AAI08050       86 QNLATSIKAYNSppee 101  zebrafish
XP_001333638  100 ANIVSLTKIFNSPPPE 115  zebrafish
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