3I6D


Conserved Protein Domain Family
proto_IX_ox

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TIGR00562: proto_IX_ox 
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protoporphyrinogen oxidase
This enzyme oxidizes protoporphyrinogen IX to protoporphyrin IX, a precursor of heme and chlorophyll. Bacillus subtilis HemY also has coproporphyrinogen III to coproporphyrin III oxidase activity in a heterologous expression system, although the role for this activity in vivo is unclear. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]
Statistics
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PSSM-Id: 213540
Aligned: 5 rows
Threshold Bit Score: 573.706
Created: 7-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3I6D_A         4 GKKHVVIIGGGITGLAAAFYMEKEIKeknlPLELTLVEASPRVGGKIQ---TVKKDG--YIIERGPDSFLERKKs---AP 75  Bacillus subtil...
P32397         4 GKKHVVIIGGGITGLAAAFYMEKEIKeknlPLELTLVEASPRVGGKIQ---TVKKDG--YIIERGPDSFLERKKs---AP 75  Bacillus subtil...
P40012        10 PRAKVAVVGGGVSGLCFTYFLSKLRP----DVEITLFESQNRTGGWIYscnTRDMSGnpIMLEKGPRTLRGVSDgtvlIM 85  Saccharomyces c...
WP_010881319   2 DMREVVVIGAGISGLSTAYRLKKE------GVDVVVYEKDDRIGGTIH---TVKEKG--YLFEVGAQTILADQE----VI 66  Aquifex aeolicus
P55826        55 ITTDCVIVGGGISGLCIAQALATKHPd--aAPNLIVTEAKDRVGGNII---TREENG--FLWEEGPNSFQPSDP----ML 123 thale cress
3I6D_A        76 QLVKDLGLEHLLVN-NA---TGQSYVLVNrtlhpmpkGAVMGIPTKIAPFVSTGLFSLSGKARAAm--DFILPAS--KTK 147 Bacillus subtil...
P32397        76 QLVKDLGLEHLLVN-NA---TGQSYVLVNrtlhpmpkGAVMGIPTKIAPFVSTGLFSLSGKARAAm--DFILPAS--KTK 147 Bacillus subtil...
P40012        86 DTLKDLGKEAVIQSiDKgciADKKFLLDPs-------DKLVQVPNSISTTVKFLLNPLGKGLITGmmgEWFRKKSphPGQ 158 Saccharomyces c...
WP_010881319  67 DFLKEAGIEPVEAS-PS---SKYRYIYKK--------GRLIPLPMSPVEFLKTPLLSLKTKLKVl---TEIFKRG--VDE 129 Aquifex aeolicus
P55826       124 TMVVDSGLKDDLVLgDP---TAPRFVLWN--------GKLRPVPSKLTDLPFFDLMSIGGKIRAGfgaLGIRPSP--PGR 190 thale cress
3I6D_A       148 DdQSLGEFFRRRVGDEVVEN-LIEPLLSGIYAGDIDKLSLMSTFPQFYQTEQKHRS----LILGm------KKTR--PQG 214 Bacillus subtil...
P32397       148 DdQSLGEFFRRRVGDEVVEN-LIEPLLSGIYAGDIDKLSLMSTFPQFYQTEQKHRS----LILGm------KKTR--PQG 214 Bacillus subtil...
P40012       159 D-ESVESICDRRFGNNYISNnMISALLRGIYGDDVSLLSAKRTFKKIYYNELKHGSntqaMIDNmrgksrsKKTEnlHQS 237 Saccharomyces c...
WP_010881319 130 D-ISIADFVREHFGEEFLNY-VVAPFISGVYAGDPEKLSLKHATPKLYEAQKKYGS----LIKaf-----iKEKTagPKG 198 Aquifex aeolicus
P55826       191 E-ESVEEFVRRNLGDEVFER-LIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQNGGS----IIGGtfk--aiQERKnaPKA 262 thale cress
3I6D_A       215 SG--QQLTAKKQGQ----------------FQTLSTGLQTLVEEIEKQLK--L-TKVYKGTKVTKLSHSGSCYS---LEL 270 Bacillus subtil...
P32397       215 SG--QQLTAKKQGQ----------------FQTLSTGLQTLVEEIEKQLK--L-TKVYKGTKVTKLSHSGSCYS---LEL 270 Bacillus subtil...
P40012       238 LTgcLNDYSNAFGKdrsklldlsntlkkypMLGLAGGLETFPKIVRNALNefKnVKIVTGNPVTQIMKRPANETtigLKA 317 Saccharomyces c...
WP_010881319 199 K---LISFGEGLGEl---------------INALAQKLEVHTENVVLRMR--------KFEDFFRLDVRGK--------- 243 Aquifex aeolicus
P55826       263 ER--DPRLPKPQGQt---------------VGSFRKGLRMLPEAISARLGskV-KLSWKLSGITKLESGGYNLT---YET 321 thale cress
3I6D_A       271 DNG-VTLDA-DSVIVTAPHKAAAGMLSEL--PAISHLKNMHSTSVANVALGFPEGS------VQMEHEGTGFVISRNSDF 340 Bacillus subtil...
P32397       271 DNG-VTLDA-DSVIVTAPHKAAAGMLSEL--PAISHLKNMHSTSVANVALGFPEGS------VQMEHEGTGFVISRNSDF 340 Bacillus subtil...
P40012       318 KSG-DQYETfDHLRLTITPPKIAKLLPKDqnSLSKLLDEIQSNTIILVNYYLPNKDv-----IDADLQGFGYLVPKSNKN 391 Saccharomyces c...
WP_010881319 244 -----KVET-KSVVVASPAYTSSYLLKEVsfSASEEFDKIDYPPVVVVNVG-----------VEGKFPKVRLLSSESGKK 306 Aquifex aeolicus
P55826       322 PDGlVSVQS-KSVVMTVPSHVASGLLRPLseSAANALSKLYYPPVAAVSISYPKEAirteclIDGELKGFGQLHPRTQGV 400 thale cress
3I6D_A       341 --AITACTWTNKKWPHAAP--------EGKT----LLRAYVGK-AGDESIVDLSDND--IINIVLEDLKKVMNINGe--P 401 Bacillus subtil...
P32397       341 --AITACTWTNKKWPHAAP--------EGKT----LLRAYVGK-AGDESIVDLSDND--IINIVLEDLKKVMNINGe--P 401 Bacillus subtil...
P40012       392 pgKLLGVIFDSVIERNFKPlfdklstnPNALnkytKVTAMIGGcMLNEHGVPVVPSRevTINAVKDALNNHLGISN---- 467 Saccharomyces c...
WP_010881319 307 --RILGAMFMSKLFPGRAP--------QGKE----LLTVFLGG-ATDREVIELSEEE--IENIVERELKEILQIDC---I 366 Aquifex aeolicus
P55826       401 --ETLGTIYSSSLFPNRAP--------PGRI----LLLNYIGG-STNTGILSKSEGE--LVEAVDRDLRKMLIKPNstdP 463 thale cress
3I6D_A       402 EMTCVTRWH-----ESMPQYHVGHKQRIKELR-EALASAYPGVYMTGASFEGV-GIPDCIDQGKAAVSDALTYLFS 470 Bacillus subtilis s...
P32397       402 EMTCVTRWH-----ESMPQYHVGHKQRIKELR-EALASAYPGVYMTGASFEGV-GIPDCIDQGKAAVSDALTYLFS 470 Bacillus subtilis s...
P40012       468 KDLEAGQWEftiadRCLPRFHVGYDAWQERAErKLQESYGQTVSVGGMGFSRSpGVPDVIVDGFNDALQLSK---- 539 Saccharomyces cerev...
WP_010881319 367 DFMHVQKWK-----RAIPQYTLGYDRFLNLAQ--EMEKDYPGLFLTGNWLYGV-STADCIRASKKVAQKVLSFLRP 434 Aquifex aeolicus
P55826       464 LKLGVRVWP-----QAIPQFLVGHFDILDTAKsSLTSSGYEGLFLGGNYVAGV-ALGRCVEGAYETAIEVNNFMSR 533 thale cress
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