Conserved Protein Domain Family
HYOU1-like_NBD

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cd10230: HYOU1-like_NBD (this model, PSSM-Id:212672 is obsolete and has been replaced by 466828)
Nucleotide-binding domain of human HYOU1 and similar proteins
This subgroup includes human HYOU1 (also known as human hypoxia up-regulated 1, GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene maps to11q23.1-q23.3) and Saccharomyces cerevisiae Lhs1p (also known as Cer1p, SsI1). Mammalian HYOU1 functions as a nucleotide exchange factor (NEF) for HSPA5 (alos known as BiP, Grp78 or HspA5) and may also function as a HSPA5-independent chaperone. S. cerevisiae Lhs1p, does not have a detectable endogenous ATPase activity like canonical HSP70s, but functions as a NEF for Kar2p; it's interaction with Kar2p is stimulated by nucleotide-binding. In addition, Lhs1p has a nucleotide-independent holdase activity that prevents heat-induced aggregation of proteins in vitro. This subgroup belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as NEFs, to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins.
Statistics
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PSSM-Id: 212672
Aligned: 51 rows
Threshold Bit Score: 384.224
Created: 11-Oct-2006
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Feature 1:nucleotide binding site [chemical binding site]
Evidence:
  • Comment:based on the structure of yeast NEF Sse1p-NBD with bound MgATP

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             ####                                                                       
AAH72436      36 MSVDLGSESMKVAIVKPGv----PMEIVLNKESRRKTPVIVTLKe-----------NERFFGDSAASMAIKnPKATLRYF 100  human
EFA76458      22 IGIDLGTQSFKIGLISPG-----KYEMVLNEQSQRKTPHQVGWFr-----------EERVFGSDAFSLWVRnPKQVYSLY 85   Polysphondyliu...
XP_644523     29 IGIDLGSQTFKVSLIKPG-----AFETVLNEQSGRKTISSVGWFk-----------DERLFSSDSFSVWARnPKQNYNLI 92   Dictyostelium ...
EEC43856      34 LGVDLGSLYMKVALVQSGs----PLEIVTNLHAKRKTEQMILFDq-----------QQRFYGADASALLARkSTKTPSAM 98   Phaeodactylum ...
XP_001440807  19 LGIDFGSEFIKAVLISPGk----SFTIIENTTSKRKTENAIAFYn-----------KERLYESDGVSKKSKsPKNTFTFL 83   Paramecium tet...
EAR85326      24 LGIDFGSQYFKISLNAPRk----QFLIVENTTSQRKTQNAISFYn-----------GERQYDKDASNKQVRtPETSFVFL 88   Tetrahymena th...
EED89924      25 LGVDLGSLYMKVALVQRNs----PLEIVTNLHSKRKTEQMVLFDa-----------GSRFYGADASSLMARkPHLTPSQM 89   Thalassiosira ...
XP_820366     61 LAVDLGVDWAKAATLGGGsgaslIPTIVLNDQANRKSPQCIAFRflpydtddilqrVERFFSEQAQSLEPRfPDQVVCGP 140  Trypanosoma cr...
XP_803753     29 LAVDIGADWAKGATRVIGgstapRASIVLNDQTNRKSPQCIAFRivpnagndtlrsVERLFAEEARSLEPRfPQQSICGP 108  Trypanosoma br...
XP_843577     28 IGVDLGSEYIKVAGPHGDk----GVDIVLNEQSRRKTDNFIGFRr-----------SDLYIGDTAKSLAARfPLCTASAV 92   Leishmania maj...
Feature 1        #                                                                               
AAH72436     101 QHLLGKqa------------------------dnPHVALYQARFPehel---------------------tfdpQRQTVH 135  human
EFA76458      86 EPLVGTiyrd---------------------gilEEIGMGSLGYSvsn------------------------dtERNTFK 120  Polysphondyliu...
XP_644523     93 QAFLGIky------------------------keGLVEEISNGLPlgfkv--------------------kndtVRNTVS 128  Dictyostelium ...
EEC43856      99 SVLLGRde------------------------qhPTVRVLAERHYpvrp---------------------vyneTRAGVT 133  Phaeodactylum ...
XP_001440807  84 NKFLGAla------------------------ndEKLVEISRQSYedfki--------------------eieeREGTFA 119  Paramecium tet...
EAR85326      89 DKFLGAlesd--------------------qevfEVAKKYYEEYAlsi------------------------dpERKTVL 124  Tetrahymena th...
EED89924      90 SVMLGRda------------------------ehPSVQVLKERHYqftp---------------------kyneTRSGIC 124  Thalassiosira ...
XP_820366    141 SLLAGRgvsrvvtdgnntggvtqgsnnkdalsldELASLTFSVVPh---------------------------sSRDKVA 193  Trypanosoma cr...
XP_803753    109 SLLAGLiv-------------------------sKEISAGQKHHEqtgnqrseregvisfsdtdrftyvvvpqiRRKSAV 163  Trypanosoma br...
XP_843577     93 NQLVRIrkds---------------------sllPFFSDLQYEYHvg-------------------------fnNHGSAT 126  Leishmania maj...
Feature 1                                                                                        
AAH72436     136 FQi----------sSQLQFSPEEVLGMVLNYSRSLAEDFAeq------piKDAVITVPVFFNQAERRAVLQAARMAGLkV 199  human
EFA76458     121 VKy----------sDDVYYTPEELLAMTLRRIKELASNYIhg------nvKECVIAIPPWLTSTQRQAVLDAASMSGLnV 184  Polysphondyliu...
XP_644523    129 IVy----------dDDTNYSAEELTGMLLRRVKDMASSYAgs------siKDCAITIPPYFTQQQRQALLDAAQLAGLnV 192  Dictyostelium ...
EEC43856     134 LTv-----------DGVEFTPEELVAMVLSHAVDISVAYAteqgstiappKDVMLTVPSYATQPERQALLDAAGLAELnV 202  Phaeodactylum ...
XP_001440807 120 FEvdgvq---vegkDTMIVKVEELAGMVLKFIAKLVDFNHqi------qiKDVVLTVPSEWNISQRSALKSAAQLAELeV 190  Paramecium tet...
EAR85326     125 FElkkfq--lsdpeEILILSIEEVVGMILLSAKRYAEKHSeiq-----niRDCVISVPVNWSIRQRTALVQAARIASLaP 197  Tetrahymena th...
EED89924     125 LTi-----------DGNEFTPEELVAMVLTHAKDITQAYGvtt-----pvKDCVLTVPNFYTQHERRALLDAAELAELnV 188  Thalassiosira ...
XP_820366    194 VRilgg-----knkSVLEFSTEELIGMFFAYLKRIAERGLnge-----plRHLVVTVSAHASLAQRQTFVDAAAVAGLrA 263  Trypanosoma cr...
XP_803753    164 VRitpggssegtttAPIEFTVEELIGMILGHMKRSAERSLdga-----pvRHLVLVVPTSSSLAYRQAMVDAAAVVGLrT 238  Trypanosoma br...
XP_843577    127 VSic---------dTKDPFTAEELYSMVLSYCKTTAVKDDvv------dpKGVVVTIPFHTSPAERRAILNAARLSGLsV 191  Leishmania maj...
Feature 1                                               # ####                                   
AAH72436     200 LQLINDNTATALSYGVFRrkdi-------nttAQNIMFYDMGSGSTVCTIVTYQmvktke-----agmqpQLQIRGVGFD 267  human
EFA76458     185 LSLVHSINAASLNFATDRef----------erNQTAIFYDMGAKSTKLSLVHFSshtevkn--kknrtvtNNVVKSMDWD 252  Polysphondyliu...
XP_644523    193 LSLIHDVNAAALSFAMDRtfl---------ekNESVIFYDMGARHTSVSLVEFEshneqikgvkknktvsSASVKGIEWD 263  Dictyostelium ...
EEC43856     203 LGLIDENTASALHYAMDKsf----------etPQLIIFYNMGASALQVSLIRFFnyeqpqkf-gkpktvpALEVLGKSWD 271  Phaeodactylum ...
XP_001440807 191 LGIINENTAAALYYALERsd----------enKHTALFYNIGSYNIQVSLVEFQavda---------qkkKVETLRVLAD 251  Paramecium tet...
EAR85326     198 IALIHDNTAAALHYGIHKlae---------nqTQTVLFYNIGATNIQSTLVDYSyvnnts----kfdtqtTIPVITVLAD 264  Tetrahymena th...
EED89924     189 LALINENSAAALHFGIDRid----------aePQTYLFYNMGAGSVQVSVVKYTsygrkeskyskektvgAFEVLGTAWD 258  Thalassiosira ...
XP_820366    264 VRLVHGTTAAAVQLAHLNieqffs--sarekgPKYIMVYDMGGRRTEVAVYEFApsrq---------rlgTITLRTAIVN 332  Trypanosoma cr...
XP_803753    239 IRLVHGSAAAATQLAHLNtetlfrghpsntteRKYAMIYDMGSSKTEVAVFRFTpatar-------ddfgTVTLVASATN 311  Trypanosoma br...
XP_843577    192 LGLMHSTTAAAFYYGVRHrgf--------gnnTLKVVVFDLGSTHTEVGVYEYLppapkap---lssafgTLRTLGVVED 260  Leishmania maj...
Feature 1               #                                                #  ##  #                
AAH72436     268 RT---LGGLEMELRLRERLAGLFNEQRkgqrak-------dvrenPRAMAKLLREANRLKTVLSANa--DHMAQIEGLMD 335  human
EFA76458     253 EN---LGGLNFDMVIVEYLKAKLKKQDssvd-----------tddLKLTIKLLKEASKMKETLSVNq--QAHIFIGGIQG 316  Polysphondyliu...
XP_644523    264 EK---LGGFDFDMVIVNHLKTLLKKQIpsan-----------vddIKITIKLLKEVGKMKENLSVNq--QAQIFIGSLVD 327  Dictyostelium ...
EEC43856     272 AT---LGGQAFDQIVVEYLADEFNKAWhastgkt----eqdvrsfPRAMIKLRLQANKVKHVLSANs--EIPVYMEAVHD 342  Phaeodactylum ...
XP_001440807 252 YSipnAGGQSLDLLLANHFAREFDNQPsrkgkk-------siftnSKAMNKLLKAANKYKEILSANk--ETQVYLEGLID 322  Paramecium tet...
EAR85326     265 YGikdVGGYAYDLTLAHYFADIIDNLPqrkgkp-------sfrtnRRGMVKLLKECNKAKEILSANk--EMTFFSEGLLD 335  Tetrahymena th...
EED89924     259 AT---LGGASFDARLVDFMASEFNAVWnekrght-----kdvrevPRAMAKLMIQANKVKHVLSANt--DFPVFVDALHD 328  Thalassiosira ...
XP_820366    333 NT---LGGRAFDRCIARYIEREHFPKArpkaiepv--lgvsspaaRKAAVSLMRAVQNARERLSVNqeaPVVVQGVQEGD 407  Trypanosoma cr...
XP_803753    312 HT---LGGRSFDRCLARYVERNLFPAAkptpvtpvldrkpvtattRRAVVSLLRAVNAARERLSVNq-nVPFVVPGVRED 387  Trypanosoma br...
XP_843577    261 RS---LGGRAFDLCVARVIEAEARAKLsigpvlg-----gttstqLKSQFSLLRAANKVRETFSVNs--NTPYTVEGIAP 330  Leishmania maj...
Feature 1                                                           ### ##                       
AAH72436     336 DVDFKAKVTRVEFEELCADLFERVPGPVQQALQSAe---MSLDEIEQVILVGGATRVPRVQEVLLKAVg---kEELGKNI 409  human
EFA76458     317 DTDFSSAITRTEFEELAAPLFERAVAPLKRIIEANg---LNPSDIDFVELIGGCSRIPGVQAALKAYLk---rEVLDKHL 390  Polysphondyliu...
XP_644523    328 DHDFQATISKQQFEELSQSLIERSLLPLKKLILSTg---IKLKDIEYFEVIGGGVRIPFIQQALKDYLk---rDTLDKHL 401  Dictyostelium ...
EEC43856     343 DVALSTTMTREQLELLASSLWARAIQPVTDVLQQAn---VTLEELTILELLGGGMRVPRIQTELIENGlggnaALLGKHI 419  Phaeodactylum ...
XP_001440807 323 GEDYTTSIQRSTFESLFENKLQQLTEPINYVLEKCn---KTKEDINIVELIGGGIRVPKIQQELANYFg---sVEVGTHL 396  Paramecium tet...
EAR85326     336 GNDFRAQINRTVFEEKAESLLSQVTKPIEAILAKAn---KTIADIDVIELIGGGIRVPKIQQILSEYLq---gKELGFHM 409  Tetrahymena th...
EED89924     329 DINYQTHISRAKFEEICHDLLERASAPIEKALKMAn---VTLDELNAVEMIGGAMRVPKVQEAVAHALgn--kIELGMHL 403  Thalassiosira ...
XP_820366    408 SGDFTTIISRAVFEQECAHLFDEAVRLRDEAIAQTkgivSSVRELTRFEMIGGATRMPKLLERLSDGYg----RAVDRTL 483  Trypanosoma cr...
XP_803753    388 GGDFIANISRAQFEEACGELFNEAVRLRDHAITQTngtvRSLNELVRLELIGGATRMPKLQERLSEGYg----KPADRTL 463  Trypanosoma br...
XP_843577    331 DRDYHSSMTRATFESECAPLFQRVKDLAMSVTDVVn---ISFKDLNSFEMMGGLSRTPKIIADLSEVIg----RDVDRTM 403  Leishmania maj...
Feature 1                       
AAH72436     410 NADEAAAMGAVYQAA 424  human
EFA76458     391 NGDEAVASGATFYAA 405  Polysphondylium pallidum PN500
XP_644523    402 NGDEAMSNGAAFYAA 416  Dictyostelium discoideum AX4
EEC43856     420 NSDESMALGAAFAGA 434  Phaeodactylum tricornutum CCAP 1055/1
XP_001440807 397 NGDESMAFGAAFHAA 411  Paramecium tetraurelia
EAR85326     410 NGDESTALGAAFHAA 424  Tetrahymena thermophila SB210
EED89924     404 NSDESMALGAAFHGA 418  Thalassiosira pseudonana CCMP1335
XP_820366    484 NSDEAAVVGASYMGA 498  Trypanosoma cruzi strain CL Brener
XP_803753    464 NSDEAVVSGAALMIH 478  Trypanosoma brucei TREU927
XP_843577    404 NMDEAAAIGAGYYAA 418  Leishmania major strain Friedlin

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