1DKG,2V7Y,3D2E,3C7N,2QXL,1YUW,3CQX,3C7N,2V7Z,2E8A,3A8Y


Conserved Protein Domain Family
HSP70_NBD

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cd10170: HSP70_NBD (this model, PSSM-Id:212667 is obsolete and has been replaced by 466811)
Click on image for an interactive view with Cn3D
Nucleotide-binding domain of the HSP70 family
HSP70 (70-kDa heat shock protein) family chaperones assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some HSP70 family members are not chaperones but instead, function as NEFs to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle, some may function as both chaperones and NEFs.
Statistics
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PSSM-Id: 212667
Aligned: 251 rows
Threshold Bit Score: 139.67
Created: 12-Oct-2006
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 26 residues -Click on image for an interactive view with Cn3D
Feature 1:nucleotide binding site [chemical binding site]
Evidence:
  • Comment:based on the structures of various NEFs and HSP70 chaperones with bound ATP/ADP analogs
  • Structure:2QXL: Baker's yeast NEF Sse1p-NBD binds MgATP, contacts at 4A
    View structure with Cn3D
  • Structure:2V7Z: Norway rat Hsc70-NBD binds hydrolyzed ATP (ADP-Pi), contacts at 4A
    View structure with Cn3D
  • Structure:2E8A: Human heat shock 70 kDa protein 1A/1B-NBD binds MgAMPPNP, contacts at 4A
    View structure with Cn3D
  • Structure:2V7Y: Geobacillus kaustophilus DnaK-NBD binds MgADP and Pi (hydrolyzed MgATP), contacts at 4A
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        # ####                                                                       
1DKG_D      5 IGIDLGTTNSCVAIMdg----ttPRVLENAEGDr-------TTPSIIAYTqd-----gETLVGQPAKRQavtn---pqnT 65  Escherichia coli
2QXL_A      4 FGLDLGNNNSVLAVArn----rgIDIVVNEVSNr-------STPSVVGFGp------kNRYLGETGKNKqtsn---iknT 63  baker's yeast
EDX83785    2 YAIDFGTTNTVIARWnae--nqsPETMVLPGLSiqqqgnppLVPSLLYIAqaamaleeVKLIAGKAVRDrgldlssdprF 79  Synechococcus sp. ...
NP_485307   3 IAIDFGTSNTVIARWnpv--tqqPETITLPGLSiqqslnppLIPSLVYVEda----nqSKILVGQQVRDrgldlkgdtrF 76  Nostoc sp. PCC 7120
ACA98484    3 IAVDFGTSNTLVTRWnaa--kgaPEILPLQGLSqrispnppLIPSLLYIEna----adQKVVIGQAIGDrgldrgpdprY 76  Synechococcus sp. ...
NP_683005   3 YAIDFGTSNTLVARWnyatqaaeAVLLPGHSVGfge--vpaLVPSLVYVEda----svPLVVVGQQVRDrgfdgvgdrrF 76  Thermosynechococcu...
NP_924622   2 YSFDFGTSNTVVARWnra--laqPETLAVRGLSqve--sppLVPSVLYVQda----gaDRVLAGQEVLArgldnsgdprF 73  Gloeobacter violac...
NP_442490   3 YAIDFGTTNTVIARWnea--trqGNLIDLPSLShplgdsgpLVPSLLYVEna----alGQVAIAREVLDrgrdistdtrF 76  Synechocystis sp. ...
NP_962053   3 VGIDFGTTHTVVAAVdr-----gNYPVVFFDGMd-------AWPSIIAANa------aGELRYGADAAAvrhd--pswsV 62  Mycobacterium aviu...
NP_601579   3 FGLDLGTTRTIAAAVdrg--nypIVTVEDSLGDth-----dFIPSVVALKa-------DRIVAGWDAIEvgqd---hpsF 65  Corynebacterium gl...
Feature 1         #                                                                           
1DKG_D     66 LFAIKRLIGrrfqdeevqrdvsimpfkiiaadngDAWVEv----kGQKMAPPQISAEVLKKMKKTAEDYLge-----pvT 136 Escherichia coli
2QXL_A     64 VANLKRIIGldyhhpdfeqeskhftsklvelddkKTGAEvrfageKHVFSATQLAAMFIDKVKDTVKQDTka-----niT 138 baker's yeast
EDX83785   80 FRNFKRGIGtp---------------------vqGFIPEi----dGYILSFETIGSWFLRSVIESLRQQDps------fD 128 Synechococcus sp. ...
NP_485307  77 FRSFKRGIGad---------------------iqGFLPEl----dGQIVTFEQVGQWFLTEVIQQLAPLEgg------lD 125 Nostoc sp. PCC 7120
ACA98484   77 FCNFKRGIGta---------------------iqGFLPEl----dGEKITFEKMGEYFLNGIFAQLKAQGep------lD 125 Synechococcus sp. ...
NP_683005  77 FSRFKRGIGat---------------------vqGYLPEl----dGCSLSFETIGRWFLQALLKELKHTSggd----laQ 127 Thermosynechococcu...
NP_924622  74 FSNFKRGIGsa---------------------vqGFVPAl----dGVEVGFERVGLWFIRRLIAALRDQGes------pD 122 Gloeobacter violac...
NP_442490  77 FKNFKRGIGva---------------------vqGFLPQl----dGHTLSLETLGQWYLDKLIRILTEQEgq-----gpD 126 Synechocystis sp. ...
NP_962053  63 LRSFKRLLNda---------------------gpQTRVKl----aGRDYRLAELLTGFLARLKTDLQQHSnatvapgepI 117 Mycobacterium aviu...
NP_601579  66 VRSFKRLLSepnvt---------------eatpvYLGDHv----hPLGAVLEAFAENVVTALRAFQTQLGdt-----spI 121 Corynebacterium gl...
Feature 1           #                            #                            ###### #        
1DKG_D    137 EAVITVPAYFNDAQRQATKDAGRIAGLe-VKRIINEPTAAALAYGLdkgt------gnrTIAVYDLGGGTFDISIIEide 209 Escherichia coli
2QXL_A    139 DVCIAVPPWYTEEQRYNIADAARIAGLn-PVRIVNDVTAAGVSYGIfktdlpegeekprIVAFVDIGHSSYTCSIMAfkk 217 baker's yeast
EDX83785  129 SVIFTVPVDSFESYRNWLGSVCQSLEId-QVRLIDEPTAAALGYQIspa--------qrTLLVIDFGGGTLDLSLIQptf 199 Synechococcus sp. ...
NP_485307 126 SLVLTVPVDSFEAYRYWLGQVCQALPVe-QVRMLDEPTAAALGYGLad---------qeILLVVDFGGGTLDLSLVQlnk 195 Nostoc sp. PCC 7120
ACA98484  126 SLVLTVPVDSFEAYRSWLSRLCEQLPEleKIQLLDEPTAAALGYGAlae-------dlkRVLVVDFGGGTVDFSLVDlnl 198 Synechococcus sp. ...
NP_683005 128 GLIFTVPVDSFETYRSWLLQVCTGFEIq-QIRLLDEPTAAALGYGVad---------rpLILVIDFGGGTLDLSLVElkt 197 Thermosynechococcu...
NP_924622 123 DVVFTVPVNSFELYRQWLLAGCSELEAt-RIQLLDESTAAALGYGLen---------gqTVLVIDFGGGTLDLSLVQpav 192 Gloeobacter violac...
NP_442490 127 CLALTVPVDSFESYRHWLSHTCRSWGVe-EVRLVDEPTAAALGYGVgd---------asQILVLDFGGGTVDFSWVQlgd 196 Synechocystis sp. ...
NP_962053 118 EAAISVPANASSAQRLLTLDAYVAAGFh-VVALLNEPSAASLEYAHryrsti--takreYVLVYDLGGGTFDASLLKmtg 194 Mycobacterium aviu...
NP_601579 122 EVVIGVPANSHSAQRLLTMSAFSATGIt-VVGLVNEPSAAAFEYTHrhartl--nskrqAIVVYDLGGGTFDSSLIRidg 198 Corynebacterium gl...
Feature 1                                                ##                                   
1DKG_D    210 vd------------------------gektFEVLATNGDThLGGEDFDSRLINYLVEEFKKDqgidlrndPLAMQRLKEA 265 Escherichia coli
2QXL_A    218 ----------------------------gqLKVLGTACDKhFGGRDFDLAITEHFADEFKTKykidirenPKAYNRILTA 269 baker's yeast
EDX83785  200 snekptgfflkwg-nqsrspqpanqtapktVRVLAKAGEN-LGGADIDRWLAEHFANTQSLPltp---ltLRLVEKLKIA 274 Synechococcus sp. ...
NP_485307 196 saqtntkpvgfllkwgnkslaeeskqktktARVLAKAGQN-LGGTDIDNWLVDYFAKTQGLGisp---ltTRLAERIKIQ 271 Nostoc sp. PCC 7120
ACA98484  199 aqgqskptgfilk-wgrksfaesktqkvktAKVLAKAGKN-LGGSDLDNWLFEYFQTQQNLPqda---lsLRLVERLKIA 273 Synechococcus sp. ...
NP_683005 198 nqrqshplglilk-wgdrqwaasdnqrprtARVIAKAGLN-LGGTDIDHWIVDEWVKRGMSAns----llLRLAERLKIQ 271 Thermosynechococcu...
NP_924622 193 peqspdgfllkwg--rklfagkdsaprtptARVLAKVGRN-LGGMDIDTWLADSLARQQKLPkga---llQRVAERLKIR 266 Gloeobacter violac...
NP_442490 197 rgqkgrsgfllkw--ggilggskaeeksalAKVLAKAGAN-LGGSDIDYWISEYFTEAQGLQvsp---wiRRLAERLKIA 270 Synechocystis sp. ...
NP_962053 195 ----------------------------hsNEVVVSEGIQrLGGDDFDEAIVELVRAGADLPgl-----dAAGRALLAEE 241 Mycobacterium aviu...
NP_601579 199 ----------------------------thHEVVSSIGISrLGGDDFDEILLQCALKAAGRQhda---fgKRAKNTLLDE 247 Corynebacterium gl...
Feature 1      #  ##                                                                          
1DKG_D    266 AEKAKIELssaqQTDVNLPYitadatgpkHMNIKVTR--AKLESL--VEDLVNRSIELLKVALQDAgls-----vsDIDD 336 Escherichia coli
2QXL_A    270 AEKLKKVLsantNAPFSVESvmn----dvDVSSQLSR--EELEEL--VKPLLERVTEPVTKALAQAkls-----aeEVDF 336 baker's yeast
EDX83785  275 LSSSQTAE----EAYFDEETl-------eSYELSLTC--DRLEDIlsKKGFFERLDTRLDQVFQQAqrqn--lsadDVDA 339 Synechococcus sp. ...
NP_485307 272 LSAQNQAS----EVYFDDENf-------eSYELELNR--DTLESIlkEHGFFEQLDDAMANLLQQArrqg--ielaDINA 336 Nostoc sp. PCC 7120
ACA98484  274 LSQKTKAT----EIYYNDQTf-------eTYELTLGR--SAFEEIleNQGFLAQLDDLLAQVLQQArrng--vgkeDIEA 338 Synechococcus sp. ...
NP_683005 272 LSQQPYAQ----EVYFDSETf-------tTLELGLER--SELEEIlrQQQFFQRLDAALTQVLQQArrqg--itpdAIEA 336 Thermosynechococcu...
NP_924622 267 LSSETAAT----EVYFDEDSl-------rTCKLTLER--EQFEALlaARGFIAQLDESLGKLLQQArqrn--ldpeAIDA 331 Gloeobacter violac...
NP_442490 271 LGEAEEAT----EVYFDDQAl-------eSYEFQLRRs-DLTEILq-QRQFFERLTALWEQVQQTAqrrg--ltpaNLDA 335 Synechocystis sp. ...
NP_962053 242 CAARKEAVg--pQTRRFLVDls------pFDRPPFSCpvDDVYAA--CAPLVDPTMRLLERVLRDPsrgradvdwsEVAG 311 Mycobacterium aviu...
NP_601579 248 SRNAKEALvp-qSRRLVLEIg--------DDDITVPV--NKFYEA--ATPLVEKSLSIMEPLIGVDdlk-----dsDIAG 309 Corynebacterium gl...
Feature 1         ### ##                      #            
1DKG_D    337 VILVGGQTRMPMVQKKVAEFFgKEPRKDv-NPDEAVAIGAAVQGG 380 Escherichia coli
2QXL_A    337 VEIIGGTTRIPTLKQSISEAFgKPLSTTl-NQDEAIAKGAAFICA 380 baker's yeast
EDX83785  340 VLLVGGSAQIPAVQSWAAGHFgVEKIKGd-RPFEAVAQGALRLQT 383 Synechococcus sp. PCC 7335
NP_485307 337 VLLVGGTVQLPAVQTWVKQYFqPEKIRCe-KPFEAIAQGALQLSQ 380 Nostoc sp. PCC 7120
ACA98484  339 VLLVGGTSQIPLVQSWLEGYFpPEKIKRd-NPFGAIAWGALQLAQ 382 Synechococcus sp. PCC 7002
NP_683005 337 VLLVGGTTQMPAVQKWVAEYFdRAKISGq-HPFTAVAMGALAVTQ 380 Thermosynechococcus elongatus BP-1
NP_924622 332 VILVGGTCQIPAVQNWVVDRFgAAKVRKd-KVFEAVAHGALRLGQ 375 Gloeobacter violaceus PCC 7421
NP_442490 336 VLVVGGTSQLPMVQDWINAQFpAGKIRNq-QPFGAIALGALQIYQ 379 Synechocystis sp. PCC 6803
NP_962053 312 IYVVGGAGGFPLVSRMLRARFgDKRVKRspHPFAATAIGLAVFLD 356 Mycobacterium avium subsp. paratuberculosis K-10
NP_601579 310 IYLVGGGSSLPLVSRLLRERFgRRVHRSp-FPSGSTAVGLAIAAD 353 Corynebacterium glutamicum ATCC 13032

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