Conserved Protein Domain Family
eIF2D_C

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cd11608: eIF2D_C 
C-terminal domain of eIF2D and related proteins
eIF2D translation initiation factor (also known as ligatin) is involved in the recruitment and delivery of aminoacyl-tRNAs to the P-site of the eukaryotic ribosome in a GTP-independent manner.
Statistics
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PSSM-Id: 211321
Aligned: 53 rows
Threshold Bit Score: 78.3739
Created: 22-Feb-2012
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative rRNA
Feature 1:putative rRNA binding site [nucleic acid binding site]
Evidence:
  • Comment:by similarity to other members of this family

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                #  ## #                   #  ### ### #                    #  #          
EGP90454     541 KIHITLETRSgNKTVTKVSGLEay--hiNARPLADELRKTCAGSTSVEPlagaskknerevMEVMVQGPQKDTVLKALER 618 Mycosphaerella ...
EGN94711     490 SILVVVKMRQgRKASTLITNFEpy--flVAESLADELRHICASATSVSPalgk-----gsgMEVFVQGKQIKAVTELLVS 562 Serpula lacryma...
XP_568075    514 PITMTVKSRGgRRTVTHVTGLElf--nvDIESFAEDMRKRCAGSASIQPregvs--pklglQEVLVQGSQQKLITEALVE 589 Cryptococcus ne...
XP_003028569 494 PVNVAHKIRQgRKAATIITGFEpfemavNSEEMAEDLRKICASATSVAPgpn-------kqLEVLVQGKQAKTVVEYLVK 566 Schizophyllum c...
XP_002619571 475 KVKILTQNVLgRKKTTSIVNFEtf--fiKPQILAEDLKNLCSGSTAINQsvhn-----palTEVMVQGPHGPAIVDYLKN 547 Clavispora lusi...
CCA72320     487 PIAITIKMRQgKKAVTLITNFEpf--hfIADSMAEDLRKLCAAQTSVSPlqgk-----anqLEVMVQGKQGKIVTDYLLQ 559 Piriformospora ...
NP_986744    451 PIKVTNERKIyKKVVTKVSNFEvy--gvDPEELAAELRVRCSGSTTITDvpn------tkaVEVQVQGPHEATIVSILNK 522 Ashbya gossypii...
EFW95520     452 IVKIVEEMKIgRKIITKIIGVEef--liDPEEVSSILKVKCSGSTTVATniqn-----pklVEVTVQGPHFKTVQDLLIK 524 Pichia angusta ...
EGV64613     443 KIDIVCETKIgRKTITRVKNFIpf--giKPNVISEDLRNLCQGSSTLEDtr--------egIEAIVQGPHYKSIHEYLIG 512 Candida tenuis ...
XP_003028568 500 PIKVVQLRKP-RMKITTITGLEsyrtvvNPEELANVLRKVCASSAFVSPpsgp-----kkpLEVIVRGALQAPSIDLYLV 573 Schizophyllum c...
Feature 1                    
EGP90454     619 RGvd-krWVEVL 629 Mycosphaerella graminicola IPO323
EGN94711     563 RGip-kkWIEAM 573 Serpula lacrymans var. lacrymans S7.3
XP_568075    590 RGvp-krWIMDE 600 Cryptococcus neoformans var. neoformans JEC21
XP_003028569 567 KGip-knWIQTE 577 Schizophyllum commune H4-8
XP_002619571 548 KGvp-iaFIDFE 558 Clavispora lusitaniae ATCC 42720
CCA72320     560 RGvp-kkWIEFE 570 Piriformospora indica DSM 11827
NP_986744    523 HGip-skYITLD 533 Ashbya gossypii ATCC 10895
EFW95520     525 QYglkptWIEYE 536 Pichia angusta DL-1
EGV64613     513 KGvp-agCITYE 523 Candida tenuis ATCC 10573
XP_003028568 574 KVgfpreLIRVE 585 Schizophyllum commune H4-8

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