3LLU,3R7W,3R7W


Conserved Protein Domain Family
Rag

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cd09915: Rag 
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Rag GTPase subfamily of Ras-related GTPases
Rag GTPases (ras-related GTP-binding proteins) constitute a unique subgroup of the Ras superfamily, playing an essential role in regulating amino acid-induced target of rapamycin complex 1 (TORC1) kinase signaling, exocytic cargo sorting at endosomes, and epigenetic control of gene expression. This subfamily consists of RagA and RagB as well as RagC and RagD that are closely related. Saccharomyces cerevisiae encodes single orthologs of metazoan RagA/B and RagC/D, Gtr1 and Gtr2, respectively. Dimer formation is important for their cellular function; these domains form heterodimers, as RagA or RagB dimerizes with RagC or RagD, and similarly, Gtr1 dimerizes with Gtr2. In response to amino acids, the Rag GTPases guide the TORC1 complex to activate the platform containing Rheb proto-oncogene by driving the relocalization of mTORC1 from discrete locations in the cytoplasm to a late endosomal and/or lysosomal compartment that is Rheb-enriched and contains Rab-7.
Statistics
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PSSM-Id: 206742
Aligned: 3 rows
Threshold Bit Score: 226.675
Created: 11-Jun-2010
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
  next features
Conserved site includes 11 residues -Click on image for an interactive view with Cn3D
Feature 1:GTP/Mg2+ binding site [chemical binding site]
Evidence:
  • Structure:3LLU: Human Ras-related GTP-binding protein C binds GNP; contacts at 4.0A
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1               ####                                          #                       
3LLU_A     22 RILLMGLRRSGKSSIQKVVFHKMsPNETLFLESTnKIYKDDIsnssfvNFQIWDFPGQMDFFD--PTFDYEMIFRgtGAL 99  human
3R7W_A      5 KLLLXGRSGSGKSSXRSIIFSNYsAFDTRRLGATiDVEHSHLrflgnxTLNLWDCGGQDVFXEnyFTKQKDHIFQxvQVL 84  baker's yeast
3R7W_B      1 XVLLXGVRRCGKSSICKVVFHNXqPLDTLYLESTsNPSLEHFst--liDLAVXELPGQLNYFE--PSYDSERLFKsvGAL 76  baker's yeast
Feature 1                                           ## #                                     #
3LLU_A    100 IYVIDAQD-DYMEALTRLHITVSKAYKVNpDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADagleklHLSFYLTS 178 human
3R7W_A     85 IHVFDVEStEVLKDIEIFAKALKQLRKYSpDAKIFVLLHKXDLVQLDKREELFQIXXKNLSETSSEfg--fpNLIGFPTS 162 baker's yeast
3R7W_B     77 VYVIDSQD-EYINAITNLAXIIEYAYKVNpSINIEVLIHKVDGLSEDFKVDAQRDIXQRTGEELLElgldgvQVSFYLTS 155 baker's yeast
Feature 1     ##                
3LLU_A    179 IYDHSIFEAFSKVVQKLI 196 human
3R7W_A    163 IWDESLYKAWSQIVCSLI 180 baker's yeast
3R7W_B    156 IFDHSIYEAFSRIVQKLI 173 baker's yeast

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