1CX4,2Z69,2QCS,1NE4,3OF1,2QVS


Conserved Protein Domain Family
cNMP

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smart00100: cNMP 
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Cyclic nucleotide-monophosphate binding domain
Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Statistics
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PSSM-Id: 197516
Aligned: 88 rows
Threshold Bit Score: 43.1583
Created: 12-Jul-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1CX4_A       163 FLKSLEVSERLKVVDVIGT------KV--YNDGEQIIAQGDSADSFFIVESGEVRITmkrkgkSDIEENGAVEIARCLRG 234  Norway rat
YP_916261     39 LLNGLTPEMRDKLLKDAQR------RS--YREGETIFLQGDPARAVFIVLNGFIKLS------RLTPNGSEAVVAILGRN 104  Paracoccus den...
2Z69_A        19 LFEPLSPVQLQELLASSDL------VN--LDKGAYVFRQGEPAHAFYYLISGCVKIY------RLTPEGQEKILEVTNER 84   Pseudomonas ae...
AAC44402      23 PFSLLDRPQIRTILDQATS------RR--YDEGSTVFGEGMAADRFYLLLDGTIRVV------RTTPTGEQIIALHIGPG 88   Rhodobacter sp...
NP_441331      7 qdRPLAAVFRRLGSELMPP------VVetFDRSKTIFFPGDPAERVYFLLKGAVKLS------RVYEAGEEITVALLREN 74   Synechocystis ...
NP_863590     19 IFSVWSDEDLSHLFKGARV------LE--MSVGQILFLEGDAATAFYFLLDGQVKLV------TSAADGHEKIVDILQGG 84   Acidithiobacil...
NP_391612      9 sdSDLISSDLYELLESISTk-----RK--MEKHTYLFREGMDAEELYLIQSGLIEIG------KLTSDGKDLTLRICQKH 75   Bacillus subti...
ZP_01784102    2 FTLPYYLPQNLNKCIISES------KT--LEKNSLIYAQGEKPKEFYFLKQGLVGLY------HSlENGKETLTRLYHAN 67   Haemophilus in...
AAC14592       2 SLANAPAPTSRTLLEVIRDldgantEL--IERNKTIFFPGDPAEKVYLIRRGAVRLS------RVyESGEEITVALLREN 73   Synechococcus ...
P34578        14 LHTFSDALLISLLSESDFQp-----DS--IQQGVVLFEKDEPTEYWYLLLSGEVQLY------SktYTGDFNHLKTLRCG 80   nematode
1CX4_A       235 QYFGELALVT--NKPRAASAHAIGT---VKCLAMDVQAFERLLGPCMEIMKRNIATY 286  Norway rat
YP_916261    105 RSFAEAMVL----RGTPYPVSAEAIs-dCTVLQIDGARLRQFLLENQEFAIGLLAST 156  Paracoccus denitrificans PD1222
2Z69_A        85 NTFAEAMMFM--DTPN-YVATAQAVv-pSQLFRFSNKAYLRQLQDNtplalallakl 137  Pseudomonas aeruginosa
AAC44402      89 QLFGIAPALA----RDTYPATAVAAa-eCVTLSWPVRLWGDFVASYPGFATESNRTL 140  Rhodobacter sphaeroides
NP_441331     75 SVFGVLSLVT--GQRSDRFYHAVAFt-pVELLSAPIEQVEQALKEHPDLSLLMLQGL 128  Synechocystis sp. PCC 6803
NP_863590     85 DLFCRSCSFF--GISLSR-AGNSGHa-rPGSGNSPYDNFLVTLQQHQELMLQMLGEL 137  Acidithiobacillus ferrooxidans
NP_391612     76 DIVGELTLFT--EEPR-YMLSAKVLe-dGEVLVINKNKLEKELIQNGALTFEFMKWM 128  Bacillus subtilis subsp. subtilis str...
ZP_01784102   68 EYFGFRTIF----SETSYHCSAKVLm-eADIVRIFPGNHANFIANNPDFSCYLMKQL 119  Haemophilus influenzae 22.1-21
AAC14592      74 SLFGVLSLLtghRSDRFYHSVAFTRvemVTAPATSVRQAIEADTSVGLLLLQGLSSR 130  Synechococcus sp. WH 7803
P34578        81 ALFGDLSTL------THSCSCLVTRp--AQLIRIAQNHFLSVYNKHGDHLQPFIIIM 129  nematode
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