1B8T,1IBI


Conserved Protein Domain Family
LIM2_CRP

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cd09403: LIM2_CRP 
Click on image for an interactive view with Cn3D
The second LIM domain of Cysteine Rich Protein (CRP)
The second LIM domain of Cysteine Rich Protein (CRP): Cysteine-rich proteins (CRPs) are characterized by the presence of two LIM domains linked to a short glycine-rich repeats (GRRs). The CRP family members include CRP1, CRP2, CRP3/MLP. CRP1, CRP2 and CRP3 share a conserved nuclear targeting signal (K/R-K/R-Y-G-P-K), which supports the fact that these proteins function not only in the cytoplasm but also in the nucleus. CRPs control regulatory pathways during cellular differentiation, and involve in complex transcription control, and the organization as well as the arrangement of the myofibrillar/cytoskeletal network. It is evident that CRP1, CRP2, and CRP3/MLP are involved in promoting protein assembly along the actin-based cytoskeleton. Although members of the CRP family share common binding partners, they are also capable of recognizing different and specific targets. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residu es, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes.
Statistics
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PSSM-Id: 188787
Aligned: 10 rows
Threshold Bit Score: 92.2537
Created: 22-Jul-2010
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Zn binding site
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:Zn binding site [ion binding site]
Evidence:
  • Structure:1B8T_A: Chicken CRP1 LIM2 domain binds Zn
    View structure with Cn3D
  • Comment: The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. The Zn binding residues of LIM domain are highly conserved.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        #  #                 #  #  #  #                 #  #  
1B8T_A       118 CPRCGQAVYAAEKViGAGKSWHKSCFRCAKCGKSLESTtLADKDGEIYCKGCYA 171 chicken
XP_420911    121 CPRCGKSVYAAEKImGGGKPWHKTCFRCAICGKSLESTnVTDKDGELYCKVCYA 174 chicken
1IBI_A        39 CSRCGDSVYAAEKViGAGKPWHKNCFRCAKCGKSLESTtLTEKEGEIYCKGCYA 92  Japanese quail
NP_001087669 118 CPRCNESVYAAEKImGAGKPWHKNCFRCAKCGKSLESTtLTEKEGEIYCKGCYA 171 African clawed frog
BAD18652     117 CPRCSQAVYAAEKViGAGKSWHKACFRCAKCGKGLESTtLADKDGEIYCKGCYA 170 human
NP_991130    118 CPRCSKAVYAAEKViGAGNAWHRGCFRCAMCGKGLESTtLADKDGEIYCKGCYA 171 zebrafish
ACQ58586     118 CPRCEKTVYAAEKIvGGGNSWHKGCFRCAKCGKGLESTtVADRDGEIFCKGCYA 171 Anoplopoma fimbria
NP_001087798 119 CPRCSKSVYAAEKViGAGNSWHKSCFRCSKCGKGLESTtVADRDGDIFCKACYA 172 African clawed frog
Q62908       119 CSRCGDSVYAAEKIiGAGKPWHKNCFRCAKCGKSLESTtLTEKEGEIYCKGCYA 172 Norway rat
NP_957191    119 CARCGDAVYAAEKImSAGKPWHKNCFRCAKCGKSLESTtQTEKDGEIYCKACYA 172 zebrafish

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