1J2O,2XJY


Conserved Protein Domain Family
LIM1_LMO2

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cd09384: LIM1_LMO2 
Click on image for an interactive view with Cn3D
The first LIM domain of LMO2 (LIM domain only protein 2)
The first LIM domain of LMO2 (LIM domain only protein 2): LMO2 is a nuclear protein that plays important roles in transcriptional regulation and development. The two tandem LIM domains of LMO2 support the assembly of a crucial cell-regulatory complex by interacting with both the TAL1-E47 and GATA1 transcription factors to form a DNA-binding complex that is capable of transcriptional activation. LMOs have also been shown to be involved in oncogenesis. LMO1 and LMO2 are activated in T-cell acute lymphoblastic leukemia by distinct chromosomal translocations. LMO2 was also shown to be involved in erythropoiesis and is required for the hematopoiesis in the adult animals. All LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes.
Statistics
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PSSM-Id: 188770
Aligned: 8 rows
Threshold Bit Score: 95.6868
Created: 10-May-2010
Updated: 5-Apr-2013
Structure
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Program:
Drawing:
Aligned Rows:
 
Zn binding site
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:Zn binding site [ion binding site]
Evidence:
  • Structure:1J2O_A: Mouse LMO2 LIM1 domain binds Zn
    View structure with Cn3D
  • Comment:The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. The Zn binding residues of LIM domain are highly conserved.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        #  #                 #  #  #  #                   #  #  
1J2O_A         6 CGGCQQNIgDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGrRLYYKLGRKLCRRDYL 61  house mouse
XP_002605616  19 CGGCSKNIsDRYFLKAMDEYWHEDCLSCDLCGCRLGEVGrHLYSKYGRKLCKRDYL 74  Florida lancelet
NP_001081112  30 CGGCQQSIgDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGrRLYYKLGRKLCRRDYL 85  African clawed frog
NP_989602     30 CGGCQQNIgDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGrRLYYKLGRKLCRRDYL 85  chicken
AAH93136      30 CGGCQQSIgDRFFLKAIEQYWHEDCLSCDLCGCRLGEVGrRLYYKLGRKLCRRDYL 85  zebrafish
ACZ62637      56 CLGCKESIkDRYFLRAMEKYWHEDCLSCDLCQCRLGEVDcHMYSKLGRKLCKRDYL 111 common urchin
XP_002731750  23 CGECREKIkDQYFLKAIGKYWHEDCLVCDLCQCRLGEVGcHVLVKLGRKLCKRDYL 78  Saccoglossus kowalevskii
2XJY_A         5 CGGCQQNIgDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGrRLYYKLGRKLCRRDYL 60  human

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