1X6A


Conserved Protein Domain Family
LIM2_LIMK

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cd09365: LIM2_LIMK 
Click on image for an interactive view with Cn3D
The second LIM domain of LIMK (LIM domain Kinase )
The second LIM domain of LIMK (LIM domain Kinase ): LIMK protein family is comprised of two members LIMK1 and LIMK2. LIMK contains two LIM domains, a PDZ domain and a kinase domain. LIMK is involved in the regulation of actin polymerization and microtubule disassembly. LIMK influences architecture of the actin cytoskeleton by regulating the activity of the cofilin family proteins cofilin1, cofilin2, and destrin. The mechanism of the activation is to phosphorylates cofilin on serine 3 and inactivates its actin-severing activity, and altering the rate of actin depolymerization. LIMKs can function in both cytoplasm and nucleus and are expressed in all tissues. Both LIMK1 and LIMK2 can act in the nucleus to suppress Rac/Cdc42-dependent cyclin D1 expression. However, LIMK1 and LIMk2 have different cellular locations. While LIMK1 localizes mainly at focal adhesions, LIMK2 is found in cytoplasmic punctae, suggesting that they may have different cellular functions. The LIM domains of LIMK have been shown to play an important role in regulating kinase activity and likely also contribute to LIMK function by acting as sites of protein-to-protein interactions. All LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes.
Statistics
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PSSM-Id: 188751
Aligned: 11 rows
Threshold Bit Score: 87.8058
Created: 7-May-2010
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Zn binding site
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:Zn binding site [ion binding site]
Evidence:
  • Structure:1X6A_A: Human LIMK2 LIM2 domain binds Zn
    View structure with Cn3D
  • Comment:The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. The Zn binding residues of LIM domain are highly conserved.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         #  #                 #  #  #  #                      #  # 
1X6A_A         18 CHGCSLLMtg-pfMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHa---TLYCGKCH 71   human
XP_002400417   54 CQNCANIItg-pvMVAGDHKFHPECFCCASCNAYIGDGDSYALVERs---KLYCGSCY 107  black-legged tick
Q8IR79         95 CQQCMAVItg-pvMVAGEHKFHPECFCCTACGSFIGEGESYALVERs---KLYCGQCY 148  fruit fly
XP_001636246   70 CHICAHNIag-lvMVIGDHKFHTECFHCQHCDSFLAVDDNYVMVERh---RLLCGNCY 123  starlet sea anemone
NP_001082219   62 CLSCSLCLtg-paMVVSHYKFHPECFSCSGCKAMIGEGESFSLVQGt---ALYCGPCQ 115  African clawed frog
XP_002130358  132 CKDCDVIItg-piMIAGVYRFHPECFKCRVCMSFISDGDLYGLVCSpnkfHIFCHVCY 188  Ciona intestinalis
NP_989462      85 CHGCAEQItkglvMVAGEQKYHPECFSCLNCRAFIGDGDTYALVERs---KLYCGHCY 139  chicken
XP_320802      34 CQQCSQFIsg-paMFAGDHKFHPECFRCESCKVFIGDRESYALLERs---KLYWYVLT 87   Anopheles gambiae str. PEST
XP_002596735   74 CHGCAQVItg-piMAAGEHKYHPECFLCMNCSIYIGDGDTYALVERs---KLYCGPCY 127  Florida lancelet
EFN81853       79 CQGCGQIItg-pvMLAGDHKFHPECFACTSCGAFIGDGESYALVERs---KLYCGVCY 132  Harpegnathos saltator
O42565         85 CQGCSENItkglvMVAGEHKYHPECFMCSRCKAYIGDGETYALVERs---KLYCGPCY 139  African clawed frog

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