2COR


Conserved Protein Domain Family
LIM3_PINCH

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cd09333: LIM3_PINCH 
Click on image for an interactive view with Cn3D
The third LIM domain of protein PINCH
The third LIM domain of protein PINCH: PINCH plays pivotal roles in the assembly of focal adhesions (FAs), regulating diverse functions in cell adhesion, growth, and differentiation through LIM-mediated protein-protein interactions. PINCH comprises an array of five LIM domains that interact with integrin-linked kinase (ILK), Nck2 (also called Nckbeta or Grb4) and other interaction partners. These interactions are essential for triggering the FA assembly and for relaying diverse mechanical and biochemical signals between Cell-extracellular matrix and the actin cytoskeleton. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes.
Statistics
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PSSM-Id: 188719
Aligned: 14 rows
Threshold Bit Score: 76.6429
Created: 7-May-2010
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Zn binding site
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:Zn binding site [ion binding site]
Evidence:
  • Structure:2COR_A: Human Pinch1 LIM3 domain binds Zn
    View structure with Cn3D
  • Comment: The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. The Zn binding residues of LIM domain are highly conserved.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        #  #                 #  #  #  #                          #  # 
2COR_A        18 CQKCHAIIde-qpLIFKNDPYHPDHFNCANCGKELtadARELKG----------ELYCLPCH 68  human
CAD38262     130 CNKCSMPIqg-ehIVYKFQVVHPEHFNCHNCGKTLtakCRDKDG----------ELYCLRCY 180 Suberites domuncula
AAX26687     158 CQTCNRSIelnkhIKFMGDFHHPHHFHCYDCGEELgsdAREHSG----------ELYCLRCF 209 Schistosoma japonicum
XP_002165873  75 CHKCHTYIeegkhIVYMGDPVHPWHYNCYECGKELdetCRKRNN----------ELFCLRCH 126 green hydra
XP_793010    139 CYRCHGVVeedmlIKYKQEPYHAYHFNCTHCSEELngtARELRG----------ELYCLPCH 190 purple urchin
XP_002129223 203 CNKCHSIIee-epLRFKGDPYHPFHFNCDNCGKELtaeARELRG----------ELYCLPCH 253 Ciona intestinalis
NP_001019560 146 CQKCHAIIee-qpLIFKNDPYHPDHFNCSDCGKELtadARELKG----------ELYCLPCH 196 zebrafish
XP_002593005 134 CQKCHQMIed-khLIFKSEPYHPYHFNCHHCGKELtevARELRG----------ELYCLPCH 184 Florida lancelet
NP_731241    143 CQKCHGLIde-epLRFRGEVYHGYHFSCTACGTELdstAREVKSrpglaandmnELYCLRCH 203 fruit fly
NP_508943    146 CHKCHAMIddgqhIKFRGDSFHPYHFKCKRCNNELttaSREVNG----------ELYCLRCH 197 nematode

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