2D8X


Conserved Protein Domain Family
LIM2_PINCH

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cd09332: LIM2_PINCH 
Click on image for an interactive view with Cn3D
The second LIM domain of protein PINCH.
The second LIM domain of protein PINCH: PINCH plays a pivotal role in the assembly of focal adhesions (FAs), regulating diverse functions in cell adhesion, growth, and differentiation through LIM-mediated protein-protein interactions. PINCH comprises an array of five LIM domains that interact with integrin-linked kinase (ILK), Nck2 (also called Nckbeta or Grb4) and other interaction partners. These interactions are essential for triggering the FA assembly and for relaying diverse mechanical and biochemical signals between Cell-extracellular matrix and the actin cytoskeleton. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes.
Statistics
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PSSM-Id: 188718
Aligned: 21 rows
Threshold Bit Score: 87.7769
Created: 7-May-2010
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Zn binding site
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:Zn binding site [ion binding site]
Evidence:
  • Structure:2D8X_A: Human Pinch1 LIM2 domain binds Zn
    View structure with Cn3D
  • Comment: The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. The Zn binding residues of LIM domain are highly conserved.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        #  #                #  #  #  #                 #  # 
2D8X_A         8 CHQCGEFIigrVIKAMNNSWHPECFRCDLCQEVLADigFVKNAGRHLCRPCH 59  human
ABS17667      82 CHQCGEFIigrVIKAMNNSWHPECFRCDICQQVLADigFVKNAGRHLCRPCH 133 African clawed frog
XP_793010     75 CGKCNEFVigrVIKALNNSWHPQCFLCELCNCELADtgFVKNRGRALCHPCH 126 purple urchin
XP_002129223 139 CGKCEEFIigrVIKAMNNNWHPECFTCKLCNTPLADvgFVKNAGRSLCRPCH 190 Ciona intestinalis
NP_001019560  82 CHQCGEFIigrVIKAMNNSWHPDCFCCDICQAVLADvgFVKNAGRHLCRPCH 133 zebrafish
XP_002593005  70 CGQCGEFVigrVIKAMNNNWHPDCFTCHTCHAPLADtgFVKNAGRALCRPCN 121 Florida lancelet
CAG31512      84 CHQCGEFIigrVIKAMNNSWHPDCFCCDICHKVLADigFVKNAGRHLCRSCH 135 chicken
XP_425142     11 EEEKGEFVigrVIKAVNNSWHPECFCCDICRQALADigFVKNVGRHLCHPWR 62  chicken
NP_001018506 117 CHQCGEFVvgrVIKAMNSSWHPDCFCCEVCEAVLADvgFVKSGGRPLCRSCH 168 zebrafish
XP_002108081  70 CGDCGEFIsgrVIKALSRNWHPQCFRCEICKTSLADsgFVKSGNRALCRKCN 121 Trichoplax adhaerens

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