1F7U,2ZUE,3FNR,1IQ0


Conserved Protein Domain Family
ArgRS_core

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cd00671: ArgRS_core 
Click on image for an interactive view with Cn3D
catalytic core domain of arginyl-tRNA synthetases
Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Statistics
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PSSM-Id: 185675
Aligned: 43 rows
Threshold Bit Score: 193.935
Created: 24-Sep-2002
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Structure:2ZUE_A; Pyrococcus horikoshii ArgRS bound to ATP analog and Mg, defined using 4.0 A contacts.
    View structure with Cn3D
  • Structure:1F7U_A; Saccharomyces cerevisiae ArgRS bound to L-arg and tRNA (based on associated journal article).
    View structure with Cn3D
  • Comment:Amino acid activation is tRNA dependent

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         #  # #     #  #                                                             
1F7U_A    144 KVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERygneealvkdpihhlfdv 223 baker's yeast
2ZUE_A    120 KVIVEHTSVNPTKPLHMGHARNAILGDVMARILRFLGYEVEVQNYIDDLGIQFAQVYWGYLRlkeeferimnelrerglk 199 Pyrococcus horikoshii
Q55486    118 RIVVDFSSPNIAKEMHVGHLRSTIIGDCLARVLEFRGYDVLRLNHVGDWGTQFGMLITYLKEvypealvtadaldigdlv 197 Synechocystis sp. ...
O51540    125 KIILEFSSPNTNKPLHVGHLRNDVIGESLSRILKAVGAKITKINLINDRGVHICKSMLAYKKfgngitpekafkkgdhli 204 Lyme disease spiro...
Q9Z7Y3    115 KIIIDFSSPNIAKDMHVGHLRSTIIGDSLARIFSYVGHDVLRLNHIGDWGTAFGMLITYLQEnpcdysdledltslykka 194 Chlamydophila pneu...
NP_422153 115 RVLIDYAGPNVAKPMHVGHLRASIIGESVKRLYRFRGDDVVGDAHFGDWGFQMGLLISAIMDedpfinalmeklpeaprg 194 Caulobacter cresce...
Q9VXN4    197 RVLVDFSSPNIAKQMHVGHLRSTIIGESLCRLLEFLQHDVIRINHLGDWGTQFGMLIAHLEDrfpnylnesppisdlqlf 276 fruit fly
P54136    193 KVIVDFSSPNIAKEMHVGHLRSTIIGESISRLFEFAGYDVLRLNHVGDWGTQFGMLIAHLQDkfpdyltvsppigdlqvf 272 human
Q19825    245 RVLVDFSSPNIAKEMHVGHLRSTIIGDSICRLFEAVGFDVLRVNHIGDWGTQFGMLIAHLYDrfpdflkklpdisdlqaf 324 Caenorhabditis ele...
Q8RG14    115 KVIIDFSSPNIAKRMHIGHLRSTIIGESISRIYRFLGYDVVADNHIGDWGTQFGKLIVGYRNwldkkaykknaieelerv 194 Fusobacterium nucl...
Feature 1                                                                                     
1F7U_A    224 yvrinkdieeeg------------------dsipleqstngkareyfkrmedgdeealkiWKRFREFSIEKYIDTYArln 285 baker's yeast
2ZUE_A    200 dnpidhalglly------------------vevnrrlednpeleneirdimkklesgelyGRKLAEEVVRAQMVTTYklg 261 Pyrococcus horikoshii
Q55486    198 tfykqakqrf-----------------------dqdeqfretsrqavvalqagdaksikaWQLLCEQSRREFQLIYDcld 254 Synechocystis sp. ...
O51540    205 gdfyvkynky----------------------sqenenaekeiqdllllweqkdvstielWKKLNKWAIEGIKETYEitn 262 Lyme disease spiro...
Q9Z7Y3    195 yvcftnd-----------------------------eefkkrsqqnvvalqakdpqaiaiWEKICETSEKAFQKIYDild 245 Chlamydophila pneu...
NP_422153 195 fssadeakvmaefekritladldriypaasvrqkedpafkerarkataelqngrfgyrllWRHFVNVSRVALEREFHalg 274 Caulobacter cresce...
Q9VXN4    277 ykeskkrfd-------------------------edeefkkraysrvvslqkgvpnsikaWELICNVSRKEFQTIYErld 331 fruit fly
P54136    273 ykeskkrfd-------------------------teeefkkrayqcvvllqgknpditkaWKLICDVSRQELNKIYDald 327 human
Q19825    325 ykeskkrfd-------------------------edeqfkkrayeyvvklqshdgdivkaWNTICDVSKKYNQIVYNyld 379 Caenorhabditis ele...
Q8RG14    195 yvkfsdeae-------------------------kdpsledlaraelkkvqdgeeentklWKEFITESLKEYNKLYKrld 249 Fusobacterium nucl...
Feature 1                                                                             #   #   
1F7U_A    286 ikyDVYSGEsqv-skeSMLKAIDLFkekglt-----hedkgAVLIDLtkfn-----kklGKAIVQKSDGTTLYLTRDVGA 354 baker's yeast
2ZUE_A    262 vkyDLLVWEsdivrrkLFEIALELLsknenfyipsdgkyrgAFVMDLrklfp---dmknPILVLRRSDGTATYTGKDIAY 338 Pyrococcus horikoshii
Q55486    255 -itIEERGEsfy--npFLPGVVELLqekdll-----vedngAQCVFLdgftn--kdgdrLPLIVQKSDGGYNYATTDLAA 324 Synechocystis sp. ...
O51540    263 tsfDKIYLEsei-fkiGKNVVLEGLekgfcy-----kredgAICIDLpsdsdekadtkvKQKVLIRSNGTSIYLTQDLGN 336 Lyme disease spiro...
Q9Z7Y3    246 -ivVEKRGEsfy--npFLPEIIEDLekkgll-----tvsndAKCVFHea--------fsIPFMVQKSDGGYNYATTDLAA 309 Chlamydophila pneu...
NP_422153 275 vdfDLWKGEsdv--ndLIEPMVLQLeakgll-----vqdqgARIVRVaregd---krdvPPLLVVSSEGSAMYGTTDLAT 344 Caulobacter cresce...
Q9VXN4    332 -isVKERGEsfy--qsRMLSVVEYLrgkgll-----evdegREIMWPddt------ktgIPLTIVKSDGGFTYDTSDMAA 397 fruit fly
P54136    328 -vsLIERGEsfy--qdRMNDIVKEFedrgfv-----qvddgRKIVFVpg--------csIPLTIVKSDGGYTYDTSDLAA 391 human
Q19825    380 -ikIKDVGEsfy--qdKMIELVKWVktnkpdm---lreedgRQIMFPtg--------cdIPLTVVKSDGGFTYDTSDLAA 445 Caenorhabditis ele...
Q8RG14    250 vhfDTYYGEsfy--ndMMADVVKELvdkkia-----vdddgAKVVFFdek------dnlFPCIVQKKDGAYLYSTSDIAT 316 Fusobacterium nucl...
Feature 1                                                     #  #                            
1F7U_A    355 AMDRYek----------------------------yHFDKMIYVIASQQDLHAAQFFEILKQMgfe--wakDLQHVNFGM 404 baker's yeast
2ZUE_A    339 HLWKFgkidvdllykewdsttwttapdgksmpnkfgNANIVINVIGAEQKHPQLAIKYALQLLgfed-aaaNLYHLAYEH 417 Pyrococcus horikoshii
Q55486    325 LNYRLnt----------------------------dGAEKIIYVTDAGQANHFAQFFQVAEKAgilt-dptQVVHVPFGL 375 Synechocystis sp. ...
O51540    337 IAVRTke----------------------------fNFEEMIYVVGSEQIQHFKSLFFVAEKLgls--knkKLIHLSHGM 386 Lyme disease spiro...
Q9Z7Y3    310 MRYRIee----------------------------dHADKIIIVTDLGQSLHFQLLEATAIAAgyl--qpgIFSHVGFGL 359 Chlamydophila pneu...
NP_422153 345 ILDRRks----------------------------fDPHLILYCVDQRQADHFETVFRAAYLAgya--eegALEHIGFGT 394 Caulobacter cresce...
Q9VXN4    398 IRHRLee----------------------------eLCDWIIYVVDSGQSTHFNTIFKAAERSailnplshRVDHVQFGV 449 fruit fly
P54136    392 IKQRLfe----------------------------eKADMIIYVVDNGQSVHFQTIFAAAQMIgwydpkvtRVFHAGFGV 443 human
Q19825    446 LKYRMle----------------------------eKCDWNIYVVDSGQSLHLETVYAAGRDFgwydesiqRVEHVAFGL 497 Caenorhabditis ele...
Q8RG14    317 VKFRKnt----------------------------yDVNRMIYLTDARQQDHFKQFFKITDMLgw----niEKYHIWFGI 364 Fusobacterium nucl...
Feature 1                   
1F7U_A    405 VQ-----GMSTRKG 413 baker's yeast
2ZUE_A    418 VErp-egKFSGRKG 430 Pyrococcus horikoshii
Q55486    376 VKgedgkKLKTRAG 389 Synechocystis sp. PCC 6803
O51540    387 VNlv-dgKMKSREG 399 Lyme disease spirochete
Q9Z7Y3    360 VLdpqgkKLKTRSG 373 Chlamydophila pneumoniae
NP_422153 395 MNgadgkPFKTRAG 408 Caulobacter crescentus CB15
Q9VXN4    450 VLgedgkKFKTRSG 463 fruit fly
P54136    444 VLgedkkKFKTRSG 457 human
Q19825    498 VLgddkkKFKTRSG 511 Caenorhabditis elegans
Q8RG14    365 IRfa-dgILSTRKG 377 Fusobacterium nucleatum subsp. nucleatum

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