1SQI,1SP9,3ISQ,1T47,1SP8,1SQD,2R5V,1CJX


Conserved Protein Domain Family
HPPD_C_like

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cd07250: HPPD_C_like (this model, PSSM-Id:176673 is obsolete and has been replaced by 319913)
Click on image for an interactive view with Cn3D
C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS)
HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, substrates, do not use alpha-ketoglutarate, and incorporate both atoms of dioxygen into the aromatic product. Both HPPD and HmaS exhibit duplicate beta barrel topology in their N- and C-terminal domains which share sequence similarity, suggestive of a gene duplication. Each protein has only one catalytic site located in at the C-terminal domain. This HPPD_C_like domain represents the C-terminal domain.
Statistics
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PSSM-Id: 176673
Aligned: 77 rows
Threshold Bit Score: 159.256
Created: 17-Feb-2009
Updated: 17-Jan-2013
Structure
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Program:
Drawing:
Aligned Rows:
 
active siteFe binding site
Conserved site includes 11 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Structure:1SQI_A; active site of Rattus norvegicus 4- hydroxyphenylpyruvate dioxygenases bound to Fe(II) and inhibitor NTBC defined by 3.5 A contacts.
    View structure with Cn3D
  • Structure:2R5V_A; active site of hydroxymandelate synthase from Amycolatopsis orientalis, by 4A distance.
    View structure with Cn3D
  • Structure:1T47_A; active site of (4-hydroxyphenyl)pyruvate, by 4A distance.
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             #                                          #                   # #         
1SQI_A       178 LEIIDHIVGNQPdqEMESASEWYLKNlQFHRFWSVDDtqvhteysSLRSIVVANye-------esIKMPINEPapgrkkS 250 Norway rat
NP_767693    429 LLAVDHIAQSMPydEMLSWLLFYTGIlDLKRLPQMEIadp---rgLVQSQAVINgd-------qsLRFVLNGSsa--nrT 496 Bradyrhizobium ...
ABC42332     439 LKRIEHMAMALPadNLDRWVLFYKSLlDFTADDEVVLpdp---ygLVKSRALRSrc-------stIRLPLNISen--rkT 506 Pseudomonas chl...
NP_599669    427 IEAIDHVNFAQPwqHFDEAVLFYTALmALETVREDEFpsp---igLVRNQVMRSpn-------daVRLLLSVApe---dG 493 Corynebacterium...
YP_001811855 441 LTGIDHVCLALPadALDTWILFFKTAfGFEAERSWLVpdp---ygLMRSRAVRSad-------gsVRIALNASvd--rhT 508 Burkholderia am...
YP_572354    428 LINIDHISYVLPptQLLSWLLFHRTVfGFDAGPEHEIadp---hgMVVSQTVTSpd-------nsVRIPLTVSsa--reT 495 Chromohalobacte...
EEB86421     433 LERIDHLAQTMSydEMLSWSLFYTTLfQMQKSPMVDVvdp---dgLVRSQALETad-------gsFRITLNGAet--hrT 500 Roseobacter sp....
YP_002945204 444 LAQVDHVALGLAldQLDTWVLFTRAVlGLEPGESLELadp---fgLIRSRGVANad-------rsVRLVLNVSls--qrT 511 Variovorax para...
YP_701349    450 FTGVDHVALAVPsdNWDGIMLLLRSVfAMAPHEGLDVtda---vgMMRSQALTMdqtgadgidrpLRISLNMVpg---aV 523 Rhodococcus sp....
YP_001361229 412 LREVDHVALPQPfaGFDSAGLFLTAVlGLCGGELSEIaap---dgLVRSRAHCSad-------gaIRIALEVG------P 475 Kineococcus rad...
Feature 1        #              #                                                                
1SQI_A       251 QIQEYVDynggAGVQHIALRTEDIITTIRHLRERGmeFLAvPSSYYRLLRenlktskiqvkeNMDVLEELKILVDYde-k 329 Norway rat
NP_767693    497 LPARFISeffgSGVQHVAFACRDIFAAVAAMRARGagFLDiPDNYYDDIEakyd----lapdLMAQLRANHILYDReg-d 571 Bradyrhizobium ...
ABC42332     507 AISHALSsyggSGVHHIAFDCDDIFAEVSRAKEAGvpLLDiPLNYYDDLAarfd----fddeFLSELAYYNVLYDRdaqg 582 Pseudomonas chl...
NP_599669    494 EQGDFLNa---AYPEHIALATADIVAVAERARKRGldFLPvPENYYDDVQarfd----lpqeFLDTLKENHLLYDRde-n 565 Corynebacterium...
YP_001811855 509 AVAESLDryhgTGLNHVAFRTDDIVKTVAAFAADGvpFLRiPPNYYDDLAarya----lpdeLIDTLSAHHLLYDRdeng 584 Burkholderia am...
YP_572354    496 LPGRFLSeh-qGGVQQIAFASGDIFATIDAMLARGlpMLRiPANYYDDLAarfd----lddaLLEAMRSRNILFDRnd-d 569 Chromohalobacte...
EEB86421     501 MAGNFLAdsfgASVQHIALSTSDIFATADAMAQRGfkPLPmSENYYADLVarfd----ldpdMLAALKAANILYDEda-q 575 Roseobacter sp....
YP_002945204 512 RTARTLSltggGAVHHIALRCDDIFESVARLRAAGtrFVPiSDNYYDDLAtrid----ldpvLLAKLRAAGVLFDRsp-t 586 Variovorax para...
YP_701349    524 SGNSHIAaarrGGISHVAFSCTDIFTAAATMQSNGfdPLViSPNYYDDLEarfg----lsreLLDRMSGSGIMYDAda-h 598 Rhodococcus sp....
YP_001361229 476 TSGRLRGr--pLASGHVAFRTDDALAAAAAFAAAGgeALEvPENYYADLGarfd----ldagFLDRLRALHVLYDRdeag 549 Kineococcus rad...
Feature 1              #            #          #   ##         
1SQI_A       330 GYLLQIFTKPMqdrPTLFLEVIQRh-nHQGFGAGNFNSLFKAFEE 373 Norway rat
NP_767693    572 GEFFQVYTHIFd--ERFFFEIVERr-nYQGFGAANAGIRLAAQSR 613 Bradyrhizobium japonicum USDA 110
ABC42332     583 GELFHVYTEPFe--GRFFFEIIQRkngYVGYGAANVAVRLAAMAK 625 Pseudomonas chloroaphis
NP_599669    566 GEFLHFYTRTL---GTLFFEVVERrggFAGWGETNAPVRLAAQYR 607 Corynebacterium glutamicum ATCC 13032
YP_001811855 585 GEFLHAYTELVd--NRFSLEIVERrggYDGYGATNAAVRLAAQAQ 627 Burkholderia ambifaria MC40-6
YP_572354    570 GDFFHAYTETFm--GRFFFEVVERrgsYSQFGAVNAPIRLAAQAG 612 Chromohalobacter salexigens DSM 3043
EEB86421     576 GAFFQFYSQPYa--GGMFFEIVERrggYKGYGAPNAPFRIAAQKR 618 Roseobacter sp. GAI101
YP_002945204 587 GDYLHIYTENIe--GGLFFELAQRtagYDAYGALNAPARMASQAQ 629 Variovorax paradoxus S110
YP_701349    599 GEFFHLFTQTVg--ADLFFEVVQRvggYEGYGDANSAMRLAAQLR 641 Rhodococcus sp. RHA1
YP_001361229 550 GELLHFFSRALs--REFFVEVLERrggYRGFGVANTPVRLAAQRR 592 Kineococcus radiotolerans SRS30216

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