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Report for CCDS30211.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30211.1 Public Mus musculus X Srpk3 23 108 98 CCDS HistoryNCBI Gene:56504Re-query CCDS DB by CCDS ID:30211.1Re-query CCDS DB by GeneID:56504See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30211.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000002081.5 ENSMUSP00000002081.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000002081.5Link to Ensembl Protein Viewer:ENSMUSP00000002081.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000002081Re-query CCDS DB by Protein ID:ENSMUSP00000002081
Original member Current member NCBI NM_019684.2 NP_062658.1 Accepted alive Link to Nucleotide Sequence:NM_019684.2Link to Protein Sequence:NP_062658.1Re-query CCDS DB by Nucleotide ID:NM_019684Re-query CCDS DB by Protein ID:NP_062658Link to BLAST:NP_062658.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062658.1 565 Q9Z0G2 565 100% 0 0

Chromosomal Locations for CCDS 30211.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 73774451 73774506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73774584 73774714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73774893 73775001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73775104 73775191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73775478 73775565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73776020 73776126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73776198 73776363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73776461 73776486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73776970 73777099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73777188 73777427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73777509 73777609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73777924 73778031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73778105 73778174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73778254 73778346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73778504 73778688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1698 nt):
ATGAGTGCCAATGCCGGTGGTAGTGGTAGTGTGGATTGTGGCGGCAGCAGCAGCAGCTCTCAGACTTCCT
GTGGGCCTGAGTCCTCAGGCTCTGAATTAACTCCAGCCACACCAGCACCTCGTTTGCTGCAGGGACTCCT
GGGCTCTGATGATGAGGAACAGGAAGACCCTAAGGACTATTGCAAGGGTGGTTACTACCCAGTGAAGATC
GGTGATTTGTTCAATGGGCGGTACCATGTGGTGCGAAAGCTAGGCTGGGGCCATTTCTCTACAGTCTGGC
TCTGCTGGGATATTCAGCGCAAGCGCTTTGTGGCCCTGAAAGTGGTGAAGAGTGCAGGACATTACACTGA
GACAGCCGTGGATGAGATCAAGCTCCTGAAATGTGTCAGGGACAGTGACCCTAGTGACCCCAAAAGGGAG
ACCATTGTTCAACTTATCGATGACTTCAGGATCTCAGGAGTAAATGGAGTCCATGTATGCATGGTGCTAG
AGGTCCTGGGCCACCAGCTCCTCAAGTGGATCATCAAATCCAACTACCAGGGTCTGCCTGTGCCCTGTGT
TAAGAGCATTGTTAGACAGGTGCTGCATGGTCTGGATTACCTCCATACTAAGTGCAAGATCATCCATACG
GACATCAAGCCTGAGAACATCTTACTGTGTGTTGGAGATGCCTACATCAGGCGCCTGGCTGCTGAAGCCA
CAGAGTGGCAGCAGTCAGGGGCCCAGCCCCCATCCCGTTCCACAGTCAGCACTGCCCCCCAGGAGGTCTT
GATTGGCAAGCTGTCCAAAAACAAGAGGAAGAAGATGAGGCGCAAAAGGAAGCAACAGAAGAGGCTGCTG
GAGGAGCGGCTGAGGGACTTGCAGAGGCTAGAGGCTATGGAGGCCGCAGTACAAGCTGAGGACTCCAGCT
CAAGACTAGAACGGGGCAGCGGCTCCACCTCTTCTTCAGGCTGCCACCCGGAGGGCACCAGAGCTGGCCC
TTCTCCAGCCTCTTCTTCCCCTGTGCCTGGGGGGGAACGAAGCCTTAGTCCCAGCTCGCAGACCTCAGGT
TTTTCAGGGTCCCTGTTCTCCACGGCTTCCTGCTCCATCCTCTCAGGTTCATCTAATCAGCGTGAGACTG
GAGGTCTTCTATCTCCTAGCACACCATTTGGTGCTTCCAATCTCCTAGTGAACCCTCTGGAGCCCCAAAA
TGCAGACAAGATCAAGATCAAGATTGCAGACCTTGGCAACGCCTGCTGGGTGCACAAGCACTTCACTGAG
GATATTCAGACTCGGCAGTACAGGGCCGTGGAGGTGCTGATCGGTGCCGAGTATGGGCCCCCAGCTGACA
TCTGGAGCACAGCATGCATGGCTTTTGAGCTGGCCACTGGTGACTACCTATTTGAGCCCCACTCTGGAGA
AGACTACAGTCGTGATGAGGACCACATTGCTCATATCGTGGAACTTCTAGGAGACATCCCTCCAGCTTTT
GCCCTCTCAGGCCGATATTCACGGGAGTTCTTCAACCGTAGAGGAGAGCTGCGCCACATCCCCAACCTCA
AGCACTGGGGCCTATATGAGGTGCTCATGGAGAAGTATGAGTGGCCCCTGGAGCAGGCCACACAGTTCAG
TGCCTTCCTGTTGCCCATGATGGAGTACATCCCTGAGAAGCGGGCCAGTGCTGCCGACTGCCTCCAGCAT
CCCTGGCTTAATCCATAG

Translation (565 aa):
MSANAGGSGSVDCGGSSSSSQTSCGPESSGSELTPATPAPRLLQGLLGSDDEEQEDPKDYCKGGYYPVKI
GDLFNGRYHVVRKLGWGHFSTVWLCWDIQRKRFVALKVVKSAGHYTETAVDEIKLLKCVRDSDPSDPKRE
TIVQLIDDFRISGVNGVHVCMVLEVLGHQLLKWIIKSNYQGLPVPCVKSIVRQVLHGLDYLHTKCKIIHT
DIKPENILLCVGDAYIRRLAAEATEWQQSGAQPPSRSTVSTAPQEVLIGKLSKNKRKKMRRKRKQQKRLL
EERLRDLQRLEAMEAAVQAEDSSSRLERGSGSTSSSGCHPEGTRAGPSPASSSPVPGGERSLSPSSQTSG
FSGSLFSTASCSILSGSSNQRETGGLLSPSTPFGASNLLVNPLEPQNADKIKIKIADLGNACWVHKHFTE
DIQTRQYRAVEVLIGAEYGPPADIWSTACMAFELATGDYLFEPHSGEDYSRDEDHIAHIVELLGDIPPAF
ALSGRYSREFFNRRGELRHIPNLKHWGLYEVLMEKYEWPLEQATQFSAFLLPMMEYIPEKRASAADCLQH
PWLNP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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