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Report for CCDS80460.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80460.1 Public Mus musculus 5 Ankrd61 23 108 98 CCDS HistoryNCBI Gene:66729Re-query CCDS DB by CCDS ID:80460.1Re-query CCDS DB by GeneID:66729See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80460.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079624.11 ENSMUSP00000078571.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079624.11Link to Ensembl Protein Viewer:ENSMUSP00000078571.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000079624Re-query CCDS DB by Protein ID:ENSMUSP00000078571
Original member Current member NCBI NM_001310772.1 NP_001297701.1 Accepted alive Link to Nucleotide Sequence:NM_001310772.1Link to Protein Sequence:NP_001297701.1Re-query CCDS DB by Nucleotide ID:NM_001310772Re-query CCDS DB by Protein ID:NP_001297701Link to BLAST:NP_001297701.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001297701.1 379 Q9CQM6-2 379 100% 0 0

Chromosomal Locations for CCDS 80460.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 143890890 143891844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143893536 143893633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143894513 143894599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1140 nt):
ATGGATGGATGGAACACAGCTTGTGTGGCTGGAAGAAGGGTACCCTCCTCCTCTCAGAACACACCCACAG
CGACGATGTCATGTAAGCAGACACAGCCTATCTTTCCCATCCATCTGGCCGCCGAGTACCGCAAGCCACA
AAGTTTGCTTTGCTTGTTACAACACGGTGCTGACCCAGAAGTAAGGGACGCCCAAGGCTTCACTACCCTT
CACCTGATGCTGCTTAACTGGCCAGCCTCTTCTACCACTTGGTCCAAACCCAGCACTCAGATCCAAAAGA
TCCTGATGGACATTCAGAACAACGCTGTCTTGTGTCTGTGCATTTTGTGTGACCACGGAGCTCAAGTTAA
TGCCCGGGTAGACAACAGCAACAAGCATTCAGCCCTCCACCTGGCCATAATACACGGGACCTACCCAGTT
CTCTCCTTTTTGGCTCAAAATGGTGCCCAGGTCAATGCTACTAATGAATCCAGCATGACGCCCCTCCACA
TGGCTGCAGACATACTGAACAAAAACATGATAGAGACACTCATTGCCTTTGGGGCCAATGTGAACTGTGC
CATCTCATCTACCGGAAACACAGCTCTGAAGCTGGCCGTGTGTACTGCATCGAGCAAAGTCGGCCGACTG
CTGGCAGCGGGGGTGGGCTGCATCCGTCTGCTGCTAAATAACGGAGCCCAGGTCAATGCCCAGGACCATG
AAGGCCAGACAGCTCTGCACGAGGCATGCTTTGGAGGCAGAGAAGCGATCATCAGTCTCTTGCTGGAATT
TGAGGCAAACGTTAACATTTTAACAAGAAATGGGGAGTCTCCCATTTACATGTACCTTCAGCGCAGTTCC
AACATCAGAGACAGATCGCTTCTGGCCAGACTACTTTACCGCACTTATCCTTTAAGACTGAGCAATAAAC
AGGGGATTCTACCAGCAGGAATCATGCTGCCAGAATACCAGCTCCTAAGGGAAACCCTAGTAAAGTTATC
AAAAAAACCTTTAACCCTCGAGGCCATCTGTAAGAGAAGCATCAGGAATGTTTATGGGGAGAAGTACAAA
TTCCACCTCGAGAAGCTCCTCCCGGCAAAGCTCTGGAACTCCATATATGGCATCTATGACCTCACCTACC
TGCTCAAAGGAGAGCCATGA

Translation (379 aa):
MDGWNTACVAGRRVPSSSQNTPTATMSCKQTQPIFPIHLAAEYRKPQSLLCLLQHGADPEVRDAQGFTTL
HLMLLNWPASSTTWSKPSTQIQKILMDIQNNAVLCLCILCDHGAQVNARVDNSNKHSALHLAIIHGTYPV
LSFLAQNGAQVNATNESSMTPLHMAADILNKNMIETLIAFGANVNCAISSTGNTALKLAVCTASSKVGRL
LAAGVGCIRLLLNNGAQVNAQDHEGQTALHEACFGGREAIISLLLEFEANVNILTRNGESPIYMYLQRSS
NIRDRSLLARLLYRTYPLRLSNKQGILPAGIMLPEYQLLRETLVKLSKKPLTLEAICKRSIRNVYGEKYK
FHLEKLLPAKLWNSIYGIYDLTYLLKGEP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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