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Report for CCDS25050.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25050.1 Public Mus musculus 11 Scarf1 23 108 98 CCDS HistoryNCBI Gene:380713Re-query CCDS DB by CCDS ID:25050.1Re-query CCDS DB by GeneID:380713See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25050.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042808.12 ENSMUSP00000044248.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042808.12Link to Ensembl Protein Viewer:ENSMUSP00000044248.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000042808Re-query CCDS DB by Protein ID:ENSMUSP00000044248
Original member Current member NCBI NM_001004157.2 NP_001004157.2 Accepted alive Link to Nucleotide Sequence:NM_001004157.2Link to Protein Sequence:NP_001004157.2Re-query CCDS DB by Nucleotide ID:NM_001004157Re-query CCDS DB by Protein ID:NP_001004157Link to BLAST:NP_001004157.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001004157.2 820 Q5ND28 820 100% 0 0

Chromosomal Locations for CCDS 25050.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 75513578 75513690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75514005 75514063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75514309 75514410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75515166 75515688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75520294 75520512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75520903 75521031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75521952 75522055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75522179 75522296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75523775 75523896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75523991 75524137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75525370 75526196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2463 nt):
ATGCTGGCCGCCATGGGACTAGAGCTGGTGTTCTCACTGTTGCTGCTCTGGACTCAGGGGACCCAGGGAT
CCACGCTAGACCCTGCTGGTCAGCACGTCTGTAAAGGCAGCAGCCCCTCTGAGCTCCAGTGTTGTCCCGG
CTGGAGGCAGAAAGATCAAGAATGCACCATCCCCATCTGTGAGGGGCCTGATGCCTGCAGGAAAGAAGAG
GTGTGCGTGAAGCCGGGCCTCTGTCGGTGTAAACCTGGATTCTTCGGAGCCCAGTGCAGCTCCCGCTGTC
CAGGACAGTACTGGGGCCACGACTGTCGTGAGACCTGCCCCTGTCATCCACGTGGCCAGTGCGAACCGGC
CACGGGTGATTGCCAATGCCAGCCTAACTACTGGGGCAGGCTCTGTGAGTTCCCCTGCACCTGCGGCCCC
CACGGACAGTGCGACCCAAAGACAGGCTTGTGCCACTGTGACCCTGGCTGGTGGTCACCCACGTGTCGTC
GCCCATGCCAGTGCAACCCAGCCTCACGCTGTGACCAGGCCACTGGAACCTGTGTATGCCCGCCGGGCTG
GTGGGGCCGCCGCTGCAGCTTCAGTTGCAACTGCCACACCTCGCCCTGCATGCAGGACTCCGGCCGCTGC
GTCTGCCTGCCGGGCTGGTGGGGTCCGGAGTGCAGTCGTAAGTGCCAGTGTGTGCGAGGCCAATGCAGCG
TTACTTCTGGCCACTGTTCCTGCCCTCCTGGCTTCCATGGAATCCGCTGTGAGCTGCCTTGCAACCCTGG
CCACTATGGGGCACAGTGCAAAGAAAGCTGTGGCCACTGTGAGCTGAATGCCACATGCTCTCCAGTCACC
GGCAACTGTGAGTCCTGCAAGCCAGGCTGGAACGGTACTCAGTGCAAGCAGCCATGTCCTGCAGGCACCT
TTGGTGAGAGGTGCACTGGGCAGTGCCCCCGCTGCCGGCTTGGGGAGCCCTGTCAAGCGGAAACTGGGCA
CTGCCAGCACTGCGACCCCGGTTGGCTGGGGCACAGGTGTGAGAACCCTTGTCCCCTTGGCACCTTTGGG
AAGGGCTGCAGCTCAACCTGCCCTGCCTGTGCTCAGGGGACTTGCGATGCCGTGACTGGGGAATGTGTCT
GCAGTGCTGGCTACTGGGGGACCAGCTGCAACAGTTCCTGCCCAGCTGGCTTCCACGGAAACAACTGCTC
TATGCCCTGCCAATGCCCAGAGGGGCTCTGCCACCCTGTGTCTGGGACCTGCCAGCTGGGCCGTCATGGT
AAGAACGCCCTCATTGTGGGCATCCTGGTACCTCTGCTGCTGCTCCTCATGGGCATCGTCTGCTGTGCCT
ACTGCTGCTCAGGAACCCGACTGGACCCCAAGGACAGGCCTGAGAGAAATGGGGCTGCCTTTTTCAGAAT
GAAGCAGCAGGTATGGGGGGCCCTCACCAACTTGGGCTCGGCACTGCCCTGTGGCTCCCTCAGTAACTAC
AAGCTACCCTGGGTGACAGTTTCTCATCACGATCCAGAGGTCCCCTTCAACCATAGCTTCATCGAGCCCC
CCTCTGCCGGCTGGGCCTCTGACGACTCCTTCTCTTCTGATCCTGACTCTGGAGAAGAGGACGAAGCTCA
TGCCTACTTCGTGCCGCCTCGAGAAGAGATGGTCCCTATGGCCCAAGAAGAGTCACCAGAAGCCAGCCTT
CCTGGAGGCTCCTTCCCTCCCCCTGAGGATGCCTCCACACCATTCCCCATTCCACGTACCTCCAGCCTGG
CTAGGGCCAAGAGGCCATCCGTCTCCTTTGCTGAAGGCACGAAGTTTGCACCACAGAATGGCCGAAGCTC
TGGGGATCTCTCCAGCCCCATACGAAAACCCAAGAGACTCTCCAGAGGTGCTCAACCCCGTCCTGAAGGG
CAGGAGGCGGAGGAGTCTACAGGCCCAGAGCAAGTGAACACAGAGGAGGATGCTCCTACGGCCACAAGCT
CTGGAGATCCTGCCACTAGTCACGGCCAACTTCCACCTGGTAGCCAGATGGTAGCTGAGTGTGCGGAGAC
CACTGATGGAGGCATCCAGGAGAGCTCAGGATCTGTGGCCACTATCTATATGCTGGCAGGGACACCTCAG
AAACCTGAGGGTCCTGTCTGGTCTGTCTTTCGTCGTTTGGGAAACTACCAGAAAGATCAGATGGATCCCA
AAGTAAAGAGTGCTATCCCTAAGCCTCTGCGCCGATCTCTGGGTCGGAACCAGGCCAGCGCTGGCTCAGC
TCCAGGTGCTGTGCTCTCCCAGGCCATGGAGTCCACCGCAGTTAGACCAGAGGAAACACCCAGAGGTCTG
GGAGATGGCATTGAGAGCTCAGGGACTGTCCAGGAGCCAGACGCTGGAGGCAGTTCCCTGGAACAGGATT
CCCAGAAGCAGGCGGAAGAGAAGGAGCAAGAGGAGCCCCTGTATGAGAATGTTGTGCCCATGTCCGTGCC
GCCACAGCACTGA

Translation (820 aa):
MLAAMGLELVFSLLLLWTQGTQGSTLDPAGQHVCKGSSPSELQCCPGWRQKDQECTIPICEGPDACRKEE
VCVKPGLCRCKPGFFGAQCSSRCPGQYWGHDCRETCPCHPRGQCEPATGDCQCQPNYWGRLCEFPCTCGP
HGQCDPKTGLCHCDPGWWSPTCRRPCQCNPASRCDQATGTCVCPPGWWGRRCSFSCNCHTSPCMQDSGRC
VCLPGWWGPECSRKCQCVRGQCSVTSGHCSCPPGFHGIRCELPCNPGHYGAQCKESCGHCELNATCSPVT
GNCESCKPGWNGTQCKQPCPAGTFGERCTGQCPRCRLGEPCQAETGHCQHCDPGWLGHRCENPCPLGTFG
KGCSSTCPACAQGTCDAVTGECVCSAGYWGTSCNSSCPAGFHGNNCSMPCQCPEGLCHPVSGTCQLGRHG
KNALIVGILVPLLLLLMGIVCCAYCCSGTRLDPKDRPERNGAAFFRMKQQVWGALTNLGSALPCGSLSNY
KLPWVTVSHHDPEVPFNHSFIEPPSAGWASDDSFSSDPDSGEEDEAHAYFVPPREEMVPMAQEESPEASL
PGGSFPPPEDASTPFPIPRTSSLARAKRPSVSFAEGTKFAPQNGRSSGDLSSPIRKPKRLSRGAQPRPEG
QEAEESTGPEQVNTEEDAPTATSSGDPATSHGQLPPGSQMVAECAETTDGGIQESSGSVATIYMLAGTPQ
KPEGPVWSVFRRLGNYQKDQMDPKVKSAIPKPLRRSLGRNQASAGSAPGAVLSQAMESTAVRPEETPRGL
GDGIESSGTVQEPDAGGSSLEQDSQKQAEEKEQEEPLYENVVPMSVPPQH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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