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Report for CCDS28481.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28481.1 Public Mus musculus 17 E4f1 23 108 98 CCDS HistoryNCBI Gene:13560Re-query CCDS DB by CCDS ID:28481.1Re-query CCDS DB by GeneID:13560See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28481.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056032.8 ENSMUSP00000062344.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056032.8Link to Ensembl Protein Viewer:ENSMUSP00000062344.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000056032Re-query CCDS DB by Protein ID:ENSMUSP00000062344
Original member Current member NCBI NM_007893.4 NP_031919.2 Accepted alive Link to Nucleotide Sequence:NM_007893.4Link to Protein Sequence:NP_031919.2Re-query CCDS DB by Nucleotide ID:NM_007893Re-query CCDS DB by Protein ID:NP_031919Link to BLAST:NP_031919.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031919.2 782 Q8CCE9-3 782 100% 0 0

Chromosomal Locations for CCDS 28481.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 24443981 24444337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24444414 24444476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24444547 24444689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24444776 24444974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24445122 24445339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24445446 24445551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24445946 24446155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24446514 24446680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24446782 24446934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24447090 24447210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24447298 24447491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24449622 24449733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24451406 24451557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24455135 24455288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2349 nt):
ATGGAGGGCGCGATGGCAGTGCGGGTGACGGCCGCTCATACGGCAGAAGCCCGGGCCGAAGCCGGGCGTG
AAGCGGGCGAGGGCGGGGTTGCGGCGGCGGCGGCCTTGTCCTCCGGCGGCTTCCTTGGGCTCCCAGCGCC
CTTCAGCGAGGAAGATGAGGACGATGTGCACAGATGTGGCCGCTGCCAAGTGGAATTCACTGCCTTGGAG
GACTTTGTCCAGCACAAGATTCAGAAGACCTGCCATCGGGCCCCGCAGGAGGCCCTGCCCACCACCCCTG
CTGCCACTGCACTGCTGGACCAGGAGGTGGTGCCCACAGCAGCAGAGGGAGGTCCAGATGAACCCATCAC
TGTGGCTCACATCGTGGTGGAGGCCACCTCTCTAGCAGAAGACATCAGCCACGCTCCTGACCTTGTTGGA
AGTGGGCACATCAAAGAGGTCATTGTGGCTGCTGAGGCAGAGCCAGGGGATGTCGAGATGGCAGAGGCTC
CAGGCAGTCCTAATCATCAGGAACTTGGGCTTCTTGGGGAGGGCGAGCAGGCCCATGTCAAGCTGCTGGT
GAACAAGGAAGGCCGCTACGTGTGCATGCTATGTCACAAGACCTTCAAAACGGGCAGCATCCTCAAGGCC
CACATGGTAACGCACAGCAGCCGCAAGGACCACGAGTGCAAGCTCTGTGGGGCCTCTTTTCGGACCAAGG
GCTCTCTCATCCGGCACCACCGACGGCACACTGATGAGCGCCCCTACAAATGTGCCAAGTGTGGAAAGAG
TTTCCGAGAGTCAGGCGCACTGACTCGGCACCTCAAATCTCTCACTCCATGCACAGAAAAGATCCGCTTC
AGCATAAGCAAGGACACAGCTGTGGGCAAAGAGGAAGTGCCTGCAGGGTCCAGTGCCTCCACTGTGGGGA
CGGTGACATCATCAGTGGCAGGAGACCCCATGGAGACATCACCTGTGATTCACCTGGTGACAGATGCCAA
GGGTACTGTCATCCATGAAGTCCACGTCCAGATGCAGGAGCTTCCCCTGGGCATGAAAGCCCTGACCCCA
GAGTCCCCAGACTCGGAGGAGCTCCCCTGTTCCAGTGAGAACAGCCGTGAGAACCTGCTACATCAGGCCA
TGCAGAATTCTGGCATCGTCCTTGAGAGGGTTGCTGGAGAGGAGAGTGCTCTGGAGCCAGCCCCTCCCTC
TGGGTCCAGTCCCCAGTGCCTGGGAGATGGGTCCCCTGAACTGCCTCTGCTGAAGGTGGAGCAGATAGAG
ACAGTGGCCAGTGAGGCCGCCACCGTGCCCAGGACCCACCCGTGCCCTCAGTGCAGTGAGACTTTCCCAA
CAGCAGCCACGCTGGAGGCCCACAAGAGAGGTCACATAGCGCCGAGGCCGTTCACCTGCACACAGTGTGG
CAAGGCCTTCCCCAAAGCCTACCTGCTCAAGAAGCACCAGGAGGTGCACGTGCACGAGCGCCGCTTCCGT
TGTGGAGACTGTGGGAAGCTTTACAAGACCATCGCTCATGTGCGGGGCCACCGGCGTGTTCACTCAGACG
AGAGGCCTTTCCCTTGTCCCCAGTGCGGCAAGCGTTACAAAACCAAGAATGCCCAGCAAGTACACTTCCG
GACACACCTGGAAGAAAAGCCCCACGTGTGCCAGTTCTGCAGCCGAGGCTTCCGGGAGAAGGGCTCTCTG
GTGCGGCATGTGAGGCACCACACAGGCGAGAAACCTTTCAAGTGCTACAAGTGTGGCCGTGGCTTCGCGG
AGCATGGCACACTCAACCGGCACCTGCGCACTAAAGGGGGCTGCCTGCTAGAAGTGGAGGAGTTGCTGGT
GTCTGAGGAGAGCCCTTCTGCGGCTGCCACTGTGCTTGCAGAAGACCCCCACACCGTGCTGGTGGAGTTC
TCGTCTGTGGTAGCTGATACCCAAGAGTACATTATTGAGGCCACTGCAGATGACACAGAGACCAGTGAAG
CCACCGAGATCATTGAGGGCACGCAGACAGAGGTGGACAGTCACATCATGAAGGTGGTCCAGCAGATCGT
GCACCAGGCTGGTGCTGGGCACCAGATCATCGTGCAGAATGTCACCATGGACCAGGAGACAGCACTGGGT
TCGGAGGCAACTGCTGCAGACACGATCACCATTGCCACTCCTGAGAGTCTTACTGAGCAGGTGGCCATGA
CACTGGCTTCAGCGATCAGTGAGGGTACTGTGCTCACAGCCCGGGCAGGTCCAAACAGTACTGAACAGGC
CACTGTGACAATGGTGTCATCAGAGGACATAGAGATCCTTGAGCACGGAGGAGAGCTGGTCATTGCTTCA
CCAGAGGGCCAGCTTGAGGTACAGACGGTCATCGTATAG

Translation (782 aa):
MEGAMAVRVTAAHTAEARAEAGREAGEGGVAAAAALSSGGFLGLPAPFSEEDEDDVHRCGRCQVEFTALE
DFVQHKIQKTCHRAPQEALPTTPAATALLDQEVVPTAAEGGPDEPITVAHIVVEATSLAEDISHAPDLVG
SGHIKEVIVAAEAEPGDVEMAEAPGSPNHQELGLLGEGEQAHVKLLVNKEGRYVCMLCHKTFKTGSILKA
HMVTHSSRKDHECKLCGASFRTKGSLIRHHRRHTDERPYKCAKCGKSFRESGALTRHLKSLTPCTEKIRF
SISKDTAVGKEEVPAGSSASTVGTVTSSVAGDPMETSPVIHLVTDAKGTVIHEVHVQMQELPLGMKALTP
ESPDSEELPCSSENSRENLLHQAMQNSGIVLERVAGEESALEPAPPSGSSPQCLGDGSPELPLLKVEQIE
TVASEAATVPRTHPCPQCSETFPTAATLEAHKRGHIAPRPFTCTQCGKAFPKAYLLKKHQEVHVHERRFR
CGDCGKLYKTIAHVRGHRRVHSDERPFPCPQCGKRYKTKNAQQVHFRTHLEEKPHVCQFCSRGFREKGSL
VRHVRHHTGEKPFKCYKCGRGFAEHGTLNRHLRTKGGCLLEVEELLVSEESPSAAATVLAEDPHTVLVEF
SSVVADTQEYIIEATADDTETSEATEIIEGTQTEVDSHIMKVVQQIVHQAGAGHQIIVQNVTMDQETALG
SEATAADTITIATPESLTEQVAMTLASAISEGTVLTARAGPNSTEQATVTMVSSEDIEILEHGGELVIAS
PEGQLEVQTVIV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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