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Report for CCDS84963.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84963.1 Public Mus musculus 5 Atp6v0a2 23 108 98 CCDS HistoryNCBI Gene:21871Re-query CCDS DB by CCDS ID:84963.1Re-query CCDS DB by GeneID:21871See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84963.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037865.12 ENSMUSP00000039737.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037865.12Link to Ensembl Protein Viewer:ENSMUSP00000039737.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000037865Re-query CCDS DB by Protein ID:ENSMUSP00000039737
Original member Current member NCBI NM_011596.5 NP_035726.2 Accepted alive Link to Nucleotide Sequence:NM_011596.5Link to Protein Sequence:NP_035726.2Re-query CCDS DB by Nucleotide ID:NM_011596Re-query CCDS DB by Protein ID:NP_035726Link to BLAST:NP_035726.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035726.2 856 P15920-1 856 100% 0 0

Chromosomal Locations for CCDS 84963.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 124629174 124629290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124632879 124632957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124636015 124636112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124637486 124637623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124639195 124639283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124641470 124641596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124644967 124645049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124645945 124646038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124646604 124646816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124712209 124712359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124712701 124712837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124713081 124713268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124713368 124713458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124714114 124714232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124716305 124716515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124717886 124718005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124718439 124718558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124719049 124719166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124719851 124720022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124721698 124721803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2571 nt):
ATGGGCTCTCTCTTCCGCAGCGAGAGCATGTGCCTGGCGCAGCTCTTCCTGCAGTCGGGCACGGCCTACG
AGTGTCTGAGCGCGCTGGGCGAGAAGGGCCTGGTGCAGTTCCGAGACCTCAATCAAAATGTAAGTTCTTT
TCAAAGAAAATTCGTCGGTGAGGTAAAGAGGTGTGAAGAGCTCGAACGAATACTGGTGTACCTGGTGCAG
GAAATCACCAGAGCTGATATTCCCCTGCCTGAAGGAGAGGCCAGTCCTCCCGCACCACCTCTTAAACATG
TCCTAGAAATGCAGGAACAGCTGCAGAAGCTGGAGGTGGAGCTCAGAGAAGTCACCAAGAACAAGGAGAA
GCTGAGGAAGAACCTGTTGGAGCTGGTGGAGTACACCCACATGCTGAGGGTCACGAAGACCTTCCTCAAG
CGGAATGTGGAGTTTGAGCCCACGTATGAAGAGTTTCCCGCCTTAGAGAACGACTCTCTGTTGGACTACA
GCTGCATGCAGCGGCTGGGCGCCAAGCTGGGATTCGTTTCTGGCCTGATTCAGCAAGGCAGAGTTGAAGC
ATTTGAAAGGATGCTGTGGCGGGCCTGCAAAGGGTACACCATTGTGACCTATGCAGAGCTGGACGAGTGC
CTGGAGGACCCTGAAACGGGTGAAGTCATAAAGTGGTACGTGTTCCTGATTTCCTTTTGGGGAGAGCAGA
TTGGCCACAAGGTTAAGAAGATATGTGACTGTTACCACTGCCACATCTACCCGTATCCAAACACGGCTGA
GGAGCGCAGGGAGATTCAGGAGGGGCTCAATACTCGGATCCAAGACCTTTACACGGTGCTGCACAAAACG
GAGGACTATCTGCGGCAAGTGCTCTGCAAAGCTGCCGAGTCCGTGTGCAGCCGTGTGGTCCAGGTGAGGA
AGATGAAGGCCATCTACCACATGCTCAACATGTGCAGCTTTGACGTCACCAACAAGTGCCTCATAGCTGA
GGTCTGGTGCCCCGAGGTGGACCTGCCAGGCTTGCGCAGAGCACTGGAGGAAGGCTCGAGAGAGAGCGGA
GCTACAATCCCCTCGTTCATGAACACAATCCCTACGAAAGAAACACCCCCCACTCTGATCCGCACCAACA
AATTCACTGAAGGTTTCCAGAACATCGTGGATGCCTATGGAGTCGGGAGCTACAGAGAAGTGAACCCAGC
TCTCTTTACCATCATCACCTTCCCGTTCCTGTTTGCTGTGATGTTTGGCGACTTTGGGCACGGCTTTGTC
ATGTTCCTGTTTGCCCTCTTACTGGTGTTAAATGAGAATCACCCCAGACTAAGCCAGTCACAGGAGATCC
TTAGGATGTTCTTTGACGGCCGGTATATCCTGCTGCTGATGGGGCTGTTCTCTGTGTACACCGGCCTCAT
CTACAACGACTGCTTCTCCAAGTCTGTGAACCTCTTTGGTTCTGGGTGGAACGTATCTGCCATGTACAGC
TCCAGCCACTCTCCAGAGGAGCAGAGGAAGATGGTACTTTGGAATGACAGCACCATCAGGCACAGCAGGA
CTTTGCAGCTGGACCCGAATATCCCTGGAGTTTTCCGAGGCCCCTACCCTTTTGGCATTGATCCTATTTG
GAACCTGGCCACAAACCGCCTCACGTTCCTCAACTCCTTCAAGATGAAAATGTCTGTGATTTTAGGAATT
TTTCACATGACTTTTGGTGTTGTTCTGGGAATATTTAACCACTTGCACTTTAGGAAGAAGTTCAACGTCT
ACCTGGTCTCGGTGCCTGAGATCCTGTTCATGCTCTGCATCTTTGGGTACCTGATTTTCATGATCATTTA
CAAGTGGCTGGCATACTCGGCAGAGACCTCGAGAGAGGCCCCGAGCATCCTGATCGAGTTCATTAACATG
TTCCTGTTCCCAACCAGCAAGACACACGGGCTCTACCCAGGGCAGGCACACGTCCAGAGAGTGTTGGTGG
CTCTCACGGTGCTGGCTGTCCCCGTGCTCTTCTTAGGAAAGCCGCTTTTTCTGCTGTGGCTGCACAACGG
GCGCAATTGCTTTGGCATGAGCCGGAGCGGTTACACACTCGTGAGGAAGGACAGCGAGGAAGAGGTGTCT
CTTCTGGGCAACCAGGACATAGAAGAGGGCAACAGCCGCATGGAAGAAGGCTGCCGAGAAGTGACGTGTG
AGGAGTTTAACTTCGGGGAGATCCTGATGACGCAGGCCATCCACTCCATTGAGTACTGCCTCGGCTGCAT
CTCCAACACCGCCTCCTACCTGAGGCTCTGGGCACTCAGCCTGGCCCATGCACAGCTCTCTGATGTGCTG
TGGGCCATGCTGATGCGCGTGGGGCTGCGTGTGGACACCACCTATGGGGTCTTGCTGCTGCTGCCTGTCA
TGGCTTTCTTTGCAGTTTTGACCATTTTTATCCTTCTGGTCATGGAGGGTCTTTCTGCATTCCTCCACGC
CATAAGGCTTCACTGGGTAGAATTTCAGAACAAATTCTACGTTGGTGCAGGCACCAAGTTTGTTCCCTTC
TCCTTCAGTCTGCTCTCCTCCAAGTTCAGTAATGATGACAGCATAGCATGA

Translation (856 aa):
MGSLFRSESMCLAQLFLQSGTAYECLSALGEKGLVQFRDLNQNVSSFQRKFVGEVKRCEELERILVYLVQ
EITRADIPLPEGEASPPAPPLKHVLEMQEQLQKLEVELREVTKNKEKLRKNLLELVEYTHMLRVTKTFLK
RNVEFEPTYEEFPALENDSLLDYSCMQRLGAKLGFVSGLIQQGRVEAFERMLWRACKGYTIVTYAELDEC
LEDPETGEVIKWYVFLISFWGEQIGHKVKKICDCYHCHIYPYPNTAEERREIQEGLNTRIQDLYTVLHKT
EDYLRQVLCKAAESVCSRVVQVRKMKAIYHMLNMCSFDVTNKCLIAEVWCPEVDLPGLRRALEEGSRESG
ATIPSFMNTIPTKETPPTLIRTNKFTEGFQNIVDAYGVGSYREVNPALFTIITFPFLFAVMFGDFGHGFV
MFLFALLLVLNENHPRLSQSQEILRMFFDGRYILLLMGLFSVYTGLIYNDCFSKSVNLFGSGWNVSAMYS
SSHSPEEQRKMVLWNDSTIRHSRTLQLDPNIPGVFRGPYPFGIDPIWNLATNRLTFLNSFKMKMSVILGI
FHMTFGVVLGIFNHLHFRKKFNVYLVSVPEILFMLCIFGYLIFMIIYKWLAYSAETSREAPSILIEFINM
FLFPTSKTHGLYPGQAHVQRVLVALTVLAVPVLFLGKPLFLLWLHNGRNCFGMSRSGYTLVRKDSEEEVS
LLGNQDIEEGNSRMEEGCREVTCEEFNFGEILMTQAIHSIEYCLGCISNTASYLRLWALSLAHAQLSDVL
WAMLMRVGLRVDTTYGVLLLLPVMAFFAVLTIFILLVMEGLSAFLHAIRLHWVEFQNKFYVGAGTKFVPF
SFSLLSSKFSNDDSIA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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