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Report for CCDS21236.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21236.1 Public Mus musculus 7 Tead2 23 108 98 CCDS HistoryNCBI Gene:21677Re-query CCDS DB by CCDS ID:21236.1Re-query CCDS DB by GeneID:21677See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21236.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033060.13 ENSMUSP00000033060.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033060.13Link to Ensembl Protein Viewer:ENSMUSP00000033060.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000033060Re-query CCDS DB by Protein ID:ENSMUSP00000033060
Original member Current member EBI ENSMUST00000107801.9 ENSMUSP00000103431.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107801.9Link to Ensembl Protein Viewer:ENSMUSP00000103431.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107801Re-query CCDS DB by Protein ID:ENSMUSP00000103431
Original member NCBI NM_001285498.1 NP_001272427.1 Updated not alive Link to Nucleotide Sequence:NM_001285498.1Link to Protein Sequence:NP_001272427.1Re-query CCDS DB by Nucleotide ID:NM_001285498Re-query CCDS DB by Protein ID:NP_001272427
Current member NCBI NM_001285498.2 NP_001272427.1 Accepted alive Link to Nucleotide Sequence:NM_001285498.2Link to Protein Sequence:NP_001272427.1Re-query CCDS DB by Nucleotide ID:NM_001285498Re-query CCDS DB by Protein ID:NP_001272427Link to BLAST:NP_001272427.1
Original member NCBI NM_011565.2 NP_035695.1 Updated not alive Link to Nucleotide Sequence:NM_011565.2Link to Protein Sequence:NP_035695.1Re-query CCDS DB by Nucleotide ID:NM_011565Re-query CCDS DB by Protein ID:NP_035695
Current member NCBI NM_011565.3 NP_035695.1 Accepted alive Link to Nucleotide Sequence:NM_011565.3Link to Protein Sequence:NP_035695.1Re-query CCDS DB by Nucleotide ID:NM_011565Re-query CCDS DB by Protein ID:NP_035695Link to BLAST:NP_035695.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001272427.1 445 P48301 445 100% 0 0
NP_035695.1 445 P48301 445 100% 0 0

Chromosomal Locations for CCDS 21236.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 45217219 45217450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45218081 45218145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45219144 45219206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45220438 45220545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45220643 45220701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45223681 45223745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45225653 45225795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45228639 45228812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45231309 45231470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45232183 45232335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45232815 45232928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1338 nt):
ATGGGGGATCCCCGGACTGGGGCCCCCCTGGATGATGGCGGGGGCTGGACAGGTAGCGAGGAAGGCAGCG
AAGAGGGCACCGGAGGCAGCGAGGGCGTTGGAGGTGATGGCAGCCCTGATGCAGAAGGTGTGTGGAGCCC
CGACATTGAGCAGAGTTTTCAGGAGGCCCTGGCCATCTACCCTCCCTGTGGCCGTCGCAAGATCATCCTG
TCAGATGAGGGCAAGATGTATGGCCGGAACGAACTCATTGCCCGTTACATCAAGCTGAGGACAGGGAAGA
CGAGAACGCGAAAGCAGGTCTCCAGCCATATTCAGGTTTTGGCTCGAAGGAAATCGAGAGAAATTCAGTC
CAAGCTGAAGGACCAAGTCTCCAAGGACAAGGCCTTCCAGACGATGGCCACCATGTCTTCGGCACAGCTC
ATCTCCGCCCCTTCCCTCCAGGCCAAGCTGGGCCCTTCTGGCCCTCAGGCCACTGAGCTTTTCCAGTTCT
GGTCAGGGAGCTCTGGGCCACCATGGAATGTTCCAGACGTGAAGCCCTTCTCACAGGCACCGTTCTCCGT
GTCACTGACGCCCCCAGCCTCTGACCTACCAGGGTACGAGCCGCCCCCAGCCCTCTCACCCCTGCCCCCA
CCCGCTCCGTCTCCCCCAGCCTGGCAGGCTCGGGCCCTGGGCACTGCCCGCCTGCAGCTGATAGAGTTCT
CAGCGTTTGTGGAACCGCCAGACGCAGTTGACTCGTTCCAGAGGCATCTGTTTGTCCACATCAGTCAGCA
GTGTCCCAGCCCTGGAGCACCACCCCTAGAGAGTGTGGACGTGCGGCAGATCTACGACAAATTCCCTGAG
AAGAAGGGCGGCCTCCGCGAGCTGTATGACCGAGGGCCACCACATGCCTTCTTCCTCGTCAAGTTCTGGG
CGGACCTGAACTGGGGCCCCAGTGCCGAGGAGGCAGGGAGCAGCGGAGGTGGCGGTGGCTTCTATGGAGT
GAGCAGCCAGTATGAGAGCCGGGAGCTCATGACACTCACCTGCTCCTCCAAGGTCTGCTCCTTTGGCAAG
CAAGTGGTAGAGAAGGTGGAGACGGAACGGGCCCAGCTGGAGGACGGGCGCTTTGTGTACCGTCTGCTGC
GCTCTCCCATGTGTGAGTACCTGGTTAATTTCCTGCACAAGCTCCGTCAGCTGCCTGAACGCTACATGAT
GAACAGTGTCCTGGAGAACTTCACCATCCTCCAGGTTGTGACAAACAGGGACACTCAGGAACTGCTGCTG
TGTACTGCCTACGTCTTTGAAGTCTCCACCAGTGAACGAGGAGCCCAGTACCACATCTACCGCCTGGTCA
GGGACTGA

Translation (445 aa):
MGDPRTGAPLDDGGGWTGSEEGSEEGTGGSEGVGGDGSPDAEGVWSPDIEQSFQEALAIYPPCGRRKIIL
SDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKSREIQSKLKDQVSKDKAFQTMATMSSAQL
ISAPSLQAKLGPSGPQATELFQFWSGSSGPPWNVPDVKPFSQAPFSVSLTPPASDLPGYEPPPALSPLPP
PAPSPPAWQARALGTARLQLIEFSAFVEPPDAVDSFQRHLFVHISQQCPSPGAPPLESVDVRQIYDKFPE
KKGGLRELYDRGPPHAFFLVKFWADLNWGPSAEEAGSSGGGGGFYGVSSQYESRELMTLTCSSKVCSFGK
QVVEKVETERAQLEDGRFVYRLLRSPMCEYLVNFLHKLRQLPERYMMNSVLENFTILQVVTNRDTQELLL
CTAYVFEVSTSERGAQYHIYRLVRD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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