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Report for CCDS27330.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27330.1 Public Mus musculus 14 Gpc6 23 108 98 CCDS HistoryNCBI Gene:23888Re-query CCDS DB by CCDS ID:27330.1Re-query CCDS DB by GeneID:23888See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27330.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078849.11 ENSMUSP00000077893.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078849.11Link to Ensembl Protein Viewer:ENSMUSP00000077893.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000078849Re-query CCDS DB by Protein ID:ENSMUSP00000077893
Original member Current member EBI ENSMUST00000088483.9 ENSMUSP00000085835.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088483.9Link to Ensembl Protein Viewer:ENSMUSP00000085835.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000088483Re-query CCDS DB by Protein ID:ENSMUSP00000085835
Original member Current member NCBI NM_011821.3 NP_035951.1 Accepted alive Link to Nucleotide Sequence:NM_011821.3Link to Protein Sequence:NP_035951.1Re-query CCDS DB by Nucleotide ID:NM_011821Re-query CCDS DB by Protein ID:NP_035951Link to BLAST:NP_035951.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035951.1 555 Q9R087 555 100% 0 0

Chromosomal Locations for CCDS 27330.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 116925936 116926095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 117186662 117186820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 117435652 117436043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 117624385 117624550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 117870353 117870483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 117888522 117888665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 117951138 117951274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 117964699 117964874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 117974884 117975086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1668 nt):
ATGCCTTCTTGGATCCGGGCTGTGATTCTTCCTCTCTCCGGGCTGCTGCTGACCCTCCCGGCCGCGGCGG
ACGTGAAGGCTCGGAGCTGCAGCGAGGTCCGTCAGGCTTACGGTGCCAAGGGATTCAGCCTGGCGGACAT
CCCCTACCAGGAGATCGCAGGGGAGCACTTACGCATCTGCCCTCAGGAATATACCTGCTGCACCACAGAA
ATGGAAGACAAGCTGAGTCAACAGAGTAAACTGGAGTTTGAAAACCTTGTAGAAGAGACAAGCCACTTTG
TGAGGACCACGTTTGTGTCGAGGCACAAGAAATTTGATGAGTTTTTCCGAGAGCTGCTGGAAAACGCAGA
AAAGTCCCTAAATGACATGTTTGTCCGGACCTACGGGATGCTGTACATGCAGAATTCAGAGGTATTCCAG
GACCTCTTCACTGAGCTAAAGCGGTACTACACAGGGGGTAACGTCAACCTGGAAGAGATGCTCAATGACT
TCTGGGCTCGGCTCCTGGAGAGGATGTTCCAGCTGATTAACCCTCAGTATCACTTCAGCGAGGACTACCT
GGAGTGTGTAAGCAAGTACACAGACCAGCTGAAGCCATTTGGAGACGTGCCACGGAAACTGAAGATTCAG
GTCACCCGCGCCTTCATCGCGGCTCGCACCTTTGTCCAGGGCCTGACAGTGGGCAGAGAGGTTGCCAACC
GAGTTTCCAAGGTGAGCCCCACCCCTGGCTGCATCCGGGCTCTCATGAAGATGCTGTACTGCCCATACTG
CCGAGGCTTGCCCACTGTGAGACCTTGCAACAACTACTGCCTCAACGTCATGAAGGGCTGCCTGGCCAAT
CAGGCAGATTTGGACACTGAGTGGAATCTCTTCATAGATGCAATGCTCTTGGTGGCTGAGCGACTGGAAG
GGCCATTCAACATTGAGTCAGTCATGGACCCAATAGACGTCAAGATCTCTGAAGCCATTATGAACATGCA
GGAAAACAGCATGCAGGTGTCAGCAAAGGTCTTTCAGGGCTGTGGCCAGCCCAAACCTGCTCCCGCTCTC
AGATCTGCTCGCTCAGCTCCAGAAAATTTTAACACCCGTTTTCGGCCCTACAACCCTGAGGAAAGACCCA
CAACTGCAGCGGGCACGAGCTTGGACCGGCTGGTCACAGACATAAAAGAGAAGCTGAAGCTCTCTAAAAA
GGTCTGGTCAGCATTGCCCTACACCATCTGCAAGGACGAACGTGTGACAGCAGGAACCTCCAACGAGGAG
GAGTGCTGGAACGGACACAGCAAAGCCAGATACCTGCCTGAGATCATGAACGATGGGCTGACCAACCAAA
TCAACAATCCTGAGGTGGAGGTGGACATCACGCGGCCAGACACTTTCATCAGACAGCAGATCATGGCTCT
CCGTGTGATGACCAACAAACTGAAGAATGCGTACAATGGCAATGACGTCAACTTCCAAGACACAAGCGAT
GAATCCAGTGGCTCAGGCAGCGGCAGTGGTTGCATGGATGATGTGTGTCCCACGGAGTTCGAGTTTGTCA
CCACCGAGGCCCCGGCGGTGGACCCGGACCGCAGAGAAGAGGAATCTTCGGCCTCGAAGTTCAGCTCCTC
CTTGATTTCCTGGTCTCTGGTCTGCATGGTCTTGGCCCTGCAGAGACTCTACAGATAA

Translation (555 aa):
MPSWIRAVILPLSGLLLTLPAAADVKARSCSEVRQAYGAKGFSLADIPYQEIAGEHLRICPQEYTCCTTE
MEDKLSQQSKLEFENLVEETSHFVRTTFVSRHKKFDEFFRELLENAEKSLNDMFVRTYGMLYMQNSEVFQ
DLFTELKRYYTGGNVNLEEMLNDFWARLLERMFQLINPQYHFSEDYLECVSKYTDQLKPFGDVPRKLKIQ
VTRAFIAARTFVQGLTVGREVANRVSKVSPTPGCIRALMKMLYCPYCRGLPTVRPCNNYCLNVMKGCLAN
QADLDTEWNLFIDAMLLVAERLEGPFNIESVMDPIDVKISEAIMNMQENSMQVSAKVFQGCGQPKPAPAL
RSARSAPENFNTRFRPYNPEERPTTAAGTSLDRLVTDIKEKLKLSKKVWSALPYTICKDERVTAGTSNEE
ECWNGHSKARYLPEIMNDGLTNQINNPEVEVDITRPDTFIRQQIMALRVMTNKLKNAYNGNDVNFQDTSD
ESSGSGSGSGCMDDVCPTEFEFVTTEAPAVDPDRREEESSASKFSSSLISWSLVCMVLALQRLYR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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