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Report for CCDS30314.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30314.1 Public Mus musculus X Gjb1 23 108 98 CCDS HistoryNCBI Gene:14618Re-query CCDS DB by CCDS ID:30314.1Re-query CCDS DB by GeneID:14618See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30314.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052130.13 ENSMUSP00000062723.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052130.13Link to Ensembl Protein Viewer:ENSMUSP00000062723.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000052130Re-query CCDS DB by Protein ID:ENSMUSP00000062723
Original member Current member EBI ENSMUST00000119190.1 ENSMUSP00000113516.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119190.1Link to Ensembl Protein Viewer:ENSMUSP00000113516.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119190Re-query CCDS DB by Protein ID:ENSMUSP00000113516
Original member Current member EBI ENSMUST00000119080.7 ENSMUSP00000113904.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119080.7Link to Ensembl Protein Viewer:ENSMUSP00000113904.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119080Re-query CCDS DB by Protein ID:ENSMUSP00000113904
Original member Current member NCBI NM_001302496.1 NP_001289425.1 Accepted alive Link to Nucleotide Sequence:NM_001302496.1Link to Protein Sequence:NP_001289425.1Re-query CCDS DB by Nucleotide ID:NM_001302496Re-query CCDS DB by Protein ID:NP_001289425Link to BLAST:NP_001289425.1
Original member Current member NCBI NM_001302497.1 NP_001289426.1 Accepted alive Link to Nucleotide Sequence:NM_001302497.1Link to Protein Sequence:NP_001289426.1Re-query CCDS DB by Nucleotide ID:NM_001302497Re-query CCDS DB by Protein ID:NP_001289426Link to BLAST:NP_001289426.1
Original member Current member NCBI NM_001302498.1 NP_001289427.1 Accepted alive Link to Nucleotide Sequence:NM_001302498.1Link to Protein Sequence:NP_001289427.1Re-query CCDS DB by Nucleotide ID:NM_001302498Re-query CCDS DB by Protein ID:NP_001289427Link to BLAST:NP_001289427.1
Original member Current member NCBI NM_008124.3 NP_032150.2 Accepted alive Link to Nucleotide Sequence:NM_008124.3Link to Protein Sequence:NP_032150.2Re-query CCDS DB by Nucleotide ID:NM_008124Re-query CCDS DB by Protein ID:NP_032150Link to BLAST:NP_032150.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001289425.1 283 P28230 283 100% 0 0
NP_001289426.1 283 P28230 283 100% 0 0
NP_001289427.1 283 P28230 283 100% 0 0
NP_032150.2 283 P28230 283 100% 0 0

Chromosomal Locations for CCDS 30314.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 101384168 101385019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (852 nt):
ATGAACTGGACAGGTCTATACACCTTGCTCAGTGGCGTGAATCGGCACTCTACAGCCATTGGCCGAGTAT
GGCTGTCTGTCATCTTCATCTTCAGAATCATGGTGCTGGTGGTGGCTGCTGAGAGCGTGTGGGGGGATGA
GAAGTCCTCTTTCATCTGTAACACCCTCCAGCCGGGCTGCAACAGCGTCTGCTATGACCATTTTTTCCCC
ATCTCCCACGTGCGCCTATGGTCCCTGCAGCTTATCTTGGTTTCCACCCCAGCTCTCCTCGTGGCAATGC
ACGTAGCTCACCAACAGCACATAGAAAAGAAAATGCTACGGCTTGAGGGGCATGGGGACCCCCTTCACCT
GGAAGAGGTAAAGAGACACAAGGTGCACATCTCAGGGACACTGTGGTGGACCTATGTCATCAGTGTGGTG
TTCCGGCTGCTGTTCGAGGCTGTCTTCATGTATGTCTTCTATCTGCTCTACCCCGGCTATGCCATGGTGC
GGCTGGTCAAGTGTGAAGCCTTCCCCTGCCCCAACACAGTGGACTGCTTCGTGTCCCGCCCCACCGAGAA
AACCGTCTTCACTGTCTTTATGCTCGCAGCCTCCGGCATCTGCATTATCCTCAACGTGGCGGAGGTGGTG
TACCTCATCATCCGGGCCTGTGCCCGCCGTGCTCAGCGCCGCTCCAATCCGCCCTCCCGCAAGGGCTCGG
GCTTCGGCCACCGCCTCTCACCTGAATACAAGCAGAATGAGATCAACAAGCTGCTGAGCGAGCAGGATGG
CTCTCTGAAAGACATACTGCGCCGCAGCCCTGGCACAGGGGCCGGGCTCGCTGAAAAGAGCGACCGATGC
TCAGCCTGCTGA

Translation (283 aa):
MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGCNSVCYDHFFP
ISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGHGDPLHLEEVKRHKVHISGTLWWTYVISVV
FRLLFEAVFMYVFYLLYPGYAMVRLVKCEAFPCPNTVDCFVSRPTEKTVFTVFMLAASGICIILNVAEVV
YLIIRACARRAQRRSNPPSRKGSGFGHRLSPEYKQNEINKLLSEQDGSLKDILRRSPGTGAGLAEKSDRC
SAC


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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