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Report for CCDS22088.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22088.1 Public Mus musculus 8 Shcbp1 23 108 98 CCDS HistoryNCBI Gene:20419Re-query CCDS DB by CCDS ID:22088.1Re-query CCDS DB by GeneID:20419See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22088.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022945.8 ENSMUSP00000022945.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022945.8Link to Ensembl Protein Viewer:ENSMUSP00000022945.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000022945Re-query CCDS DB by Protein ID:ENSMUSP00000022945
Original member NCBI NM_011369.3 NP_035499.1 Updated not alive Link to Nucleotide Sequence:NM_011369.3Link to Protein Sequence:NP_035499.1Re-query CCDS DB by Nucleotide ID:NM_011369Re-query CCDS DB by Protein ID:NP_035499
Current member NCBI NM_011369.4 NP_035499.1 Accepted alive Link to Nucleotide Sequence:NM_011369.4Link to Protein Sequence:NP_035499.1Re-query CCDS DB by Nucleotide ID:NM_011369Re-query CCDS DB by Protein ID:NP_035499Link to BLAST:NP_035499.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035499.1 668 Q9Z179 668 100% 0 0

Chromosomal Locations for CCDS 22088.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 4736094 4736407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 4739125 4739266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 4739595 4739681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 4741848 4741966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 4744447 4744578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 4748705 4748825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 4749292 4749460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 4749552 4749785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 4754220 4754312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 4764881 4765089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 4767907 4768022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 4768144 4768311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 4779421 4779523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2007 nt):
ATGGCTGATGATTTGCGGGCTGGTGGAGTTCTGGAACCTATAGCTATGGTTCCACCGAGACCTGACTTGG
CGGCGGAGAAGGAACCGGCGTCCTGGAAGGAAGGTTTATTCTTGGATGCAGATCCATGCAGTGATCAAGG
CTATCATGCTAATCCAGGTGCTACTGTAAAAACTCTCATACCAGAAGGAAAAACTCCTTTTCCACGAATT
ATCCAAACAAATGAACTTCTGTTTTATGAACGATTCAGAGCCTATCAAGATTACATTTTAGCTGACTGTA
AGGCCTCTGAGGTAAAGGAATTCACAGTCAGCTTCTTGGAAAAGGTCCTTGAACCATCTGGATGGTGGGC
AGTCTGGCACACTAATGTGTTTGAGGTGTTGGTTGAGGTTACAAATGTGGACTTTCCATCCCTGAAGGCG
GTCGTAAGGCTTGCAGAGCCATGCATCTATGAATCTAAATTGAGCACGTTTACCTTGGCCAATGTGAAGG
AGCTTTTGGACCTGAAGGAGTTTCATCTGCCTCTGCAGGAGTTGTGGGTGGTATCAGATGACTCACATGA
ATTCCACCAGATGGCACTTGCAATTGAGCACGTCAGATTTTTCTACAAACACATCTGGAGGAGTTGGGAT
GAGGAAGAGGAGGATGAGTATGACTATTTTGTCAGATGTGTTGAACCTCGACTGAGATTGTATTATGACA
TACTTGAAGATCGAGTTCCCTCGGGACTTATTGTTGACTACCACAATCTGTTGTCTCAATGTGAAGAGAG
TTACAGGAAATTTTTAAATCTGAGAAGCAGTTTGTCCAATTGTAATTCTGATTCTGAGCAGGAAAATATC
TCCATGGTGGAAGGGTTAAATTTGTATTCAGAAATTGAACAGTTGAAACAAAAGCTAAAGCTCATTGAGA
ATCCTTTGTTAAGATATGTTTTTGGTTATCAGAAGAACTCTAATATCCAAGGAAAGGGTACTCGTCAAAA
TGGCCAGAAGGTCATCCATGTGGTTTCCTCCACCATGAAGACAGGTCTACTTCGGTCTCTATTCAAGGAC
AGGTTTTGTGAGGAGTCTTGCAAAGAAGAAACAGAAATTAAGTTCCATAGTGATCTGTTGTCTGGTATAA
ATGCCTGCTATGATGGTGACACTGTCATTATTTGTCCTGGCCATTATGTAGTTCATGGCACCTGTTCCAT
AGCTGACTCCATTGAGTTGGAAGGATATGGCCTACCAGATGACATTGTCATAGAAAAGAGGGGCAAAGGA
GATACTTTTGTGGATTGCACGGGTATGGATGTTAAAATTTCAGGCATAAAATTTATTCAGCATGATTCTG
TGGAAGGAATCTTAATCATTCACCATGGCAAGACCACACTGGAAAACTGTGTACTACAATGTGAAACCAC
AGGAGTCACAGTGCGCACATCAGCAGAACTTTTCATGAAAAACTCAGATGTATATGGTGCCAAGGGTGCT
GGTATAGAAATATATCCTGGAAGTAAATGTACCCTGACTGACAATGGAATCCATCACTGCAAGGAAGGAA
TTCTCATTAAGGACTTCCTTGATGAACATTATGATATTCCCAAAATATCGATGATAAATAACGTCATACA
CAATAATGAAGGTTATGGTGTTGTTTTGGTGAAGCCTACAATTTTCTGTGATCTACAGGAAAATACACAA
GATGAAATTAATGACAATATGGTTCAGAAAAATAAAGAGGCAGATGTCACTGAAGGATTAGATCTGGAAG
AAATGCTTCAGTGTGTGGCTAGCAAAATGGAGCCTTATGCCACAGCTGACTTTAATGAACAAGCTAAGGG
AAACTGTGAAATTATAAATGAACTACTTGCTATTTCCATGCAAAAAGGCCGGATGAAGAAAAGACTGAGT
GAACTTGGGATTACACAAGCTGATGACAACATAATGTCACAGGAGATGTTTATTGAAATTATGGGGAACC
AGTTTAAGTGGAATGGCAAAGGGAGTTTTGGCACATTTCTTTACTAG

Translation (668 aa):
MADDLRAGGVLEPIAMVPPRPDLAAEKEPASWKEGLFLDADPCSDQGYHANPGATVKTLIPEGKTPFPRI
IQTNELLFYERFRAYQDYILADCKASEVKEFTVSFLEKVLEPSGWWAVWHTNVFEVLVEVTNVDFPSLKA
VVRLAEPCIYESKLSTFTLANVKELLDLKEFHLPLQELWVVSDDSHEFHQMALAIEHVRFFYKHIWRSWD
EEEEDEYDYFVRCVEPRLRLYYDILEDRVPSGLIVDYHNLLSQCEESYRKFLNLRSSLSNCNSDSEQENI
SMVEGLNLYSEIEQLKQKLKLIENPLLRYVFGYQKNSNIQGKGTRQNGQKVIHVVSSTMKTGLLRSLFKD
RFCEESCKEETEIKFHSDLLSGINACYDGDTVIICPGHYVVHGTCSIADSIELEGYGLPDDIVIEKRGKG
DTFVDCTGMDVKISGIKFIQHDSVEGILIIHHGKTTLENCVLQCETTGVTVRTSAELFMKNSDVYGAKGA
GIEIYPGSKCTLTDNGIHHCKEGILIKDFLDEHYDIPKISMINNVIHNNEGYGVVLVKPTIFCDLQENTQ
DEINDNMVQKNKEADVTEGLDLEEMLQCVASKMEPYATADFNEQAKGNCEIINELLAISMQKGRMKKRLS
ELGITQADDNIMSQEMFIEIMGNQFKWNGKGSFGTFLY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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