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Report for CCDS15234.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15234.1 Public Mus musculus 1 Marco 23 108 98 CCDS HistoryNCBI Gene:17167Re-query CCDS DB by CCDS ID:15234.1Re-query CCDS DB by GeneID:17167See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15234.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027639.7 ENSMUSP00000027639.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027639.7Link to Ensembl Protein Viewer:ENSMUSP00000027639.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000027639Re-query CCDS DB by Protein ID:ENSMUSP00000027639
Original member Current member NCBI NM_010766.3 NP_034896.1 Accepted alive Link to Nucleotide Sequence:NM_010766.3Link to Protein Sequence:NP_034896.1Re-query CCDS DB by Nucleotide ID:NM_010766Re-query CCDS DB by Protein ID:NP_034896Link to BLAST:NP_034896.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034896.1 518 Q60754 518 100% 0 0

Chromosomal Locations for CCDS 15234.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 120474659 120474789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 120476554 120476730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 120477366 120477410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 120477852 120477950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 120479344 120479388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 120484625 120484687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 120484774 120484872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 120485689 120485724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 120485832 120485930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 120488147 120488254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 120488532 120488576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 120490913 120490957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 120492032 120492130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 120493620 120493655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 120494044 120494262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 120494741 120494842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 120504669 120504777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1557 nt):
ATGGGAAGTAAAGAACTCCTCAAAGAGGAAGACTTCTTGGGCAGCACAGAAGACAGAGCCGATTTTGACC
AAGCTATGTTCCCTGTGATGGAGACCTTCGAAATCAATGATCCAGTGCCCAAGAAGAGAAATGGGGGGAC
CTTCTGCATGGCAGTCATGGCCATCCACCTGATCCTGCTCACGGCAGGTACTGCACTGCTGCTGATTCAA
GTTCTCAATCTGCAGGAGCAGCTCCAGATGCTAGAGATGTGCTGTGGCAATGGATCACTAGCTATCGAGG
ACAAGCCCTTCTTCTCGCTGCAGTGGGCACCCAAAACACACCTGGTACCTAGAGCACAGGGGCTGCAAGC
CTTGCAGGCCCAGCTCAGCTGGGTCCATACCAGCCAGGAGCAACTCCGTCAGCAGTTCAACAACCTCACT
CAAAATCCAGAGTTGTTCCAGATTAAAGGTGAACGAGGCTCTCCAGGTCCAAAAGGGGCCCCGGGTGCTC
CTGGAATCCCCGGGCTGCCTGGGCCAGCTGCTGAGAAGGGAGAAAAGGGGGCTGCAGGTCGTGATGGAAC
CCCAGGTGTCCAAGGACCCCAGGGCCCACCAGGCAGCAAGGGAGAGGCAGGCCTCCAGGGACTTACGGGT
GCACCAGGGAAGCAAGGAGCAACTGGTGCTCCAGGACCTCGAGGAGAGAAGGGCAGCAAAGGTGACATAG
GTCTCACTGGCCCCAAGGGGGAACATGGCACCAAGGGAGACAAAGGGGACCTAGGCCTTCCAGGAAACAA
AGGGGACATGGGCATGAAGGGAGACACGGGGCCCATGGGGTCCCCTGGAGCTCAGGGAGGTAAAGGTGAT
GCTGGAAAACCAGGCCTACCAGGTTTGGCTGGATCTCCAGGAGTCAAAGGTGACCAAGGAAAACCTGGAG
TGCAGGGTGTTCCAGGCCCTCAAGGTGCACCAGGACTTTCAGGTGCCAAGGGTGAGCCAGGACGCACTGG
TCTTCCTGGGCCAGCAGGACCCCCGGGAATTGCTGGGAATCCAGGGATTGCAGGTGTGAAAGGAAGCAAG
GGTGACACAGGAATTCAAGGACAGAAAGGCACAAAAGGAGAATCAGGAGTCCCAGGTCTTGTAGGCAGAA
AGGGAGACACTGGAAGCCCTGGGCTGGCAGGTCCCAAAGGAGAACCTGGACGAGTCGGTCAGAAGGGAGA
CCCGGGGATGAAAGGGTCTTCTGGCCAGCAAGGACAAAAGGGAGAAAAGGGTCAAAAAGGCGAATCTTTC
CAACGCGTCCGGATCATGGGTGGCACCAACAGAGGCCGAGCTGAAGTTTACTATAACAATGAGTGGGGGA
CAATTTGTGATGATGATTGGGATAATAATGATGCGACTGTCTTCTGTCGCATGCTCGGTTACTCCAGAGG
GAGAGCACTTAGCAGCTATGGAGGTGGCTCTGGGAACATCTGGCTGGACAATGTGAATTGTCGGGGCACA
GAGAACAGTTTGTGGGACTGCAGTAAGAACTCCTGGGGCAATCACAATTGCGTACATAATGAAGATGCGG
GTGTGGAATGCTCCTGA

Translation (518 aa):
MGSKELLKEEDFLGSTEDRADFDQAMFPVMETFEINDPVPKKRNGGTFCMAVMAIHLILLTAGTALLLIQ
VLNLQEQLQMLEMCCGNGSLAIEDKPFFSLQWAPKTHLVPRAQGLQALQAQLSWVHTSQEQLRQQFNNLT
QNPELFQIKGERGSPGPKGAPGAPGIPGLPGPAAEKGEKGAAGRDGTPGVQGPQGPPGSKGEAGLQGLTG
APGKQGATGAPGPRGEKGSKGDIGLTGPKGEHGTKGDKGDLGLPGNKGDMGMKGDTGPMGSPGAQGGKGD
AGKPGLPGLAGSPGVKGDQGKPGVQGVPGPQGAPGLSGAKGEPGRTGLPGPAGPPGIAGNPGIAGVKGSK
GDTGIQGQKGTKGESGVPGLVGRKGDTGSPGLAGPKGEPGRVGQKGDPGMKGSSGQQGQKGEKGQKGESF
QRVRIMGGTNRGRAEVYYNNEWGTICDDDWDNNDATVFCRMLGYSRGRALSSYGGGSGNIWLDNVNCRGT
ENSLWDCSKNSWGNHNCVHNEDAGVECS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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