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Report for CCDS22680.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22680.1 Public Mus musculus 8 Cfdp1 23 108 98 CCDS HistoryNCBI Gene:23837Re-query CCDS DB by CCDS ID:22680.1Re-query CCDS DB by GeneID:23837See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22680.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034432.6 ENSMUSP00000034432.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034432.6Link to Ensembl Protein Viewer:ENSMUSP00000034432.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000034432Re-query CCDS DB by Protein ID:ENSMUSP00000034432
Original member Current member NCBI NM_011801.2 NP_035931.1 Accepted alive Link to Nucleotide Sequence:NM_011801.2Link to Protein Sequence:NP_035931.1Re-query CCDS DB by Nucleotide ID:NM_011801Re-query CCDS DB by Protein ID:NP_035931Link to BLAST:NP_035931.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035931.1 295 O88271 295 100% 0 0

Chromosomal Locations for CCDS 22680.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 111768697 111768787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111779251 111779409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111830870 111830989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111840358 111840485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111841783 111841990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111845094 111845211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111854144 111854207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (888 nt):
ATGGAGGAATTCGACTCCGAAGACTTCTCCACATCGGACGAGGATGAGGACTACTTGCCGTCCGGTGGAG
AGTACAGTGAAGATGATGTCAATGAATTAGTAAAGGAAGATGAAGTGGACGGTGAAGAGCAGGCTGAGAA
AACCAAAGGGAAAAGAAGGAAGGCTCAGGGCATTCCAGCCAGGAAAAGGAAACAAAGTGGCCTCTTGTTA
GAAGAAGAGGAAGATGGCAAGGAAGACTCTGGAGGTAGTAGCAGTGAAGAAGATGAAGAGGAGCAAGAAG
GAGGCCTTGGGTCAGAGAATGCAAGGAAGAAGAAGGAAGATGAGTTGTGGGCCAGCTTCCTTAATGATGT
AGGACCAAAGTCAAAAGCAGCCCCAGGTTCACAAACTAAGGTAGCCGAGGAGACTGAAGAGATTAGTTCG
AATAAACCGTTGGTCAAAGCAGATGAGCTGGATAAGCCTAGAGAATCAGAAAAGGTGAAGATTACCAAGG
TGTTTGACTTCGCTGGCGAAGAAGTAAGGGTGACTAAGGAAGTAGATGCTGCGTCTAAGGAAGCGAAGTC
TTTCCTCAAGCAAACAGAGAGAGAAAAACCGCAGGCTCTTGTCACTTCACCAGCGACACCACTCCCTGCT
GGGTCAGGGATAAAAAGAGCAAGTGGTATGAGCAGCCTCTTAGGGAAAATTGGAGCCAAAAAACAGAAGA
TGAGCACCCTTGAGAAATCCAAACTGGACTGGGAGAGCTTCAAGGAAGAAGAGGGGATTGGTGAAGAACT
GGCCATCCATAACCGAGGGAAAGAAGGGTACATTGAGCGGAAAGCTTTTCTGGATCGAGTGGACCACAGG
CAGTTTGAAATTGAGCGAGATCTCAGGCTGAGCAAAATGAAACCTTGA

Translation (295 aa):
MEEFDSEDFSTSDEDEDYLPSGGEYSEDDVNELVKEDEVDGEEQAEKTKGKRRKAQGIPARKRKQSGLLL
EEEEDGKEDSGGSSSEEDEEEQEGGLGSENARKKKEDELWASFLNDVGPKSKAAPGSQTKVAEETEEISS
NKPLVKADELDKPRESEKVKITKVFDFAGEEVRVTKEVDAASKEAKSFLKQTEREKPQALVTSPATPLPA
GSGIKRASGMSSLLGKIGAKKQKMSTLEKSKLDWESFKEEEGIGEELAIHNRGKEGYIERKAFLDRVDHR
QFEIERDLRLSKMKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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