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Report for CCDS25134.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25134.1 Public Mus musculus 11 Cdk5r1 23 108 98 CCDS HistoryNCBI Gene:12569Re-query CCDS DB by CCDS ID:25134.1Re-query CCDS DB by GeneID:12569See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25134.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053413.11 ENSMUSP00000099514.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053413.11Link to Ensembl Protein Viewer:ENSMUSP00000099514.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000053413Re-query CCDS DB by Protein ID:ENSMUSP00000099514
Original member Current member NCBI NM_009871.3 NP_034001.1 Accepted alive Link to Nucleotide Sequence:NM_009871.3Link to Protein Sequence:NP_034001.1Re-query CCDS DB by Nucleotide ID:NM_009871Re-query CCDS DB by Protein ID:NP_034001Link to BLAST:NP_034001.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034001.1 307 P61809 307 100% 0 0

Chromosomal Locations for CCDS 25134.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 80477509 80478432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (924 nt):
ATGGGCACGGTGCTGTCCCTATCCCCCAGCTATCGGAAGGCCACACTGTTTGAGGATGGCGCGGCCACCG
TGGGCCACTACACGGCCGTGCAGAACAGCAAGAACGCCAAGGACAAGAACCTGAAGCGGCACTCCATCAT
CTCGGTGCTGCCTTGGAAGAGGATCGTGGCGGTGTCAGCGAAGAAGAAGAACTCCAAGAAGGCGCAGCCC
AACAGCAGCTACCAGAGCAACATCGCGCATCTCAACAATGAGAACCTGAAGAAGTCGCTGTCCTGTGCCA
ACCTGTCCACATTCGCCCAGCCCCCGCCGGCTCAGCCGCCCGCACCCCCAGCCAGCCAGCTTTCTGGCTC
CCAGACTGGGGTCTCCTCTTCTGTCAAGAAGGCCCCGCACCCTGCCATCACCTCTGCAGGGACACCCAAA
CGGGTCATCGTCCAGGCGTCCACTAGTGAGCTGCTGCGCTGCCTGGGTGAGTTTCTCTGCCGCCGGTGCT
ACCGCCTGAAGCACTTGTCCCCAACGGACCCCGTGCTCTGGCTGCGCAGCGTGGACCGCTCCCTGCTTCT
GCAGGGCTGGCAGGACCAGGGTTTCATCACACCGGCCAATGTGGTCTTCCTCTACATGCTCTGCAGGGAT
GTCATCTCCTCTGAGGTGGGCTCCGACCATGAGCTCCAGGCTGTCCTGCTGACCTGTCTGTACCTCTCCT
ATTCCTACATGGGCAATGAGATCTCCTACCCGCTCAAGCCCTTCCTGGTAGAGAGCTGTAAGGAAGCCTT
TTGGGACCGTTGCCTCTCAGTTATCAACCTCATGAGCTCCAAGATGCTGCAGATCAATGCCGACCCACAC
TATTTCACACAAGTGTTCTCTGACTTGAAGAATGAGAGCGGTCAGGAGGACAAGAAGCGACTCCTCCTGG
GGCTGGATCGGTGA

Translation (307 aa):
MGTVLSLSPSYRKATLFEDGAATVGHYTAVQNSKNAKDKNLKRHSIISVLPWKRIVAVSAKKKNSKKAQP
NSSYQSNIAHLNNENLKKSLSCANLSTFAQPPPAQPPAPPASQLSGSQTGVSSSVKKAPHPAITSAGTPK
RVIVQASTSELLRCLGEFLCRRCYRLKHLSPTDPVLWLRSVDRSLLLQGWQDQGFITPANVVFLYMLCRD
VISSEVGSDHELQAVLLTCLYLSYSYMGNEISYPLKPFLVESCKEAFWDRCLSVINLMSSKMLQINADPH
YFTQVFSDLKNESGQEDKKRLLLGLDR


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser

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