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Report for CCDS20691.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20691.1 Public Mus musculus 6 Bcat1 23 108 98 CCDS HistoryNCBI Gene:12035Re-query CCDS DB by CCDS ID:20691.1Re-query CCDS DB by GeneID:12035See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20691.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032402.11 ENSMUSP00000032402.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032402.11Link to Ensembl Protein Viewer:ENSMUSP00000032402.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000032402Re-query CCDS DB by Protein ID:ENSMUSP00000032402
Original member Current member NCBI NM_001024468.3 NP_001019639.1 Accepted alive Link to Nucleotide Sequence:NM_001024468.3Link to Protein Sequence:NP_001019639.1Re-query CCDS DB by Nucleotide ID:NM_001024468Re-query CCDS DB by Protein ID:NP_001019639Link to BLAST:NP_001019639.1

Chromosomal Locations for CCDS 20691.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 145000263 145000304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 145004351 145004425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 145007616 145007756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 145010050 145010135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 145015449 145015591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 145019192 145019355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 145032783 145032902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 145034541 145034651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 145039435 145039635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 145047292 145047363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 145048563 145048769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1362 nt):
ATGCTGCATCGGCTGCGCTCGCCCCTGCGCCGGGTGCTTGCTGGTGGCTCTCCCATCGTACCTCTTTCAC
CCGCCACGCCAAACTGCAGTCCCGGGCTGTCGGGATCCGCGGTGCGCCACGAGTCGCCGCTGTGCCACGT
ATTCCCACGCTCCCGCAGCTTCGTCATGGCCTGCTTGCCCAGAGCAACTGCAACCCTGGCCCGCCAGGAC
TGCAGTAATGGATGCTCCGCGCCGTTTGCTGGAGAAAGAGGATCAGAAGAAGTGGCGGAGACTTTTAGGG
CCAAAGATCTCATCATCACACCAGCCACTGTCTTAAAAGAGAAGCCGGACCCGGATTCGCTGGTCTTTGG
AGCTACGTTTACTGACCACATGCTGACGGTGGAGTGGTCCTCTGCGTCTGGATGGGAGAAACCTCACATT
AAGCCTTTTGGAAACTTGCCCATACATCCCGCTGCCTCTGTTTTGCACTACGCTGTGGAACTGTTTGAAG
GCTTGAAAGCCTTTCGGGGAGTTGATAACAAGATCCGATTGTTCCGGCCGGACCTCAACATGGATAGAAT
GTGCCGATCTGCTGTGAGGACCACGCTGCCGATGTTTGACAAGGAGGAGCTCCTAAAGTGTATTCTTCAG
CTTCTACAGATCGACCAAGAATGGGTTCCCTACTCCACCTCTGCCAGCCTCTACATCCGCCCCACATTTA
TCGGAACTGAGCCATCTCTTGGCGTCAAGAAGCCTTCCAAAGCCCTACTCTTTGTGATCCTGAGCCCCGT
GGGACCTTATTTTTCTAGTGGATCTTTTACTCCGGTGTCCCTGTGGGCCAATCCAAAGTACATCAGAGCC
TGGAAAGGTGGGACTGGAGACTGCAAGATGGGCGGCAATTATGGAGCCTCCCTTCTGGCACAGTGCGAGG
CCGTGGAGAATGGCTGTCAGCAGGTCCTGTGGCTGTACGGCAAGGACAACCAGATAACTGAAGTAGGCAC
AATGAATCTTTTCCTCTACTGGATAAACGAAGACGGAGAAGAGGAGCTGGCAACGCCCCCACTAGATGGC
ATCATTCTCCCAGGAGTGACCAGGCAGAGCATCCTGGAGCTGGCACAACAGTGGGGTGAGTTTAAGGTAT
GTGAGAGACACCTCACCATGGATGACCTGGCCACCGCCCTTGAGGGGAACAGAGTGAAGGAGATGTTCGG
CTCAGGGACAGCCTGCGTTGTCTGCCCAGTCTCTGATATTCTGTACAAGGGCCAGATGCTGCATATTCCA
ACGATGGAGAATGGCCCCAAGCTTGCAAGTCGAATCCTGGGAAAGCTGACTGATATCCAGTATGGAAGGG
TGGAGAGTGACTGGACAATCGAGCTACCCTGA

Translation (453 aa):
MLHRLRSPLRRVLAGGSPIVPLSPATPNCSPGLSGSAVRHESPLCHVFPRSRSFVMACLPRATATLARQD
CSNGCSAPFAGERGSEEVAETFRAKDLIITPATVLKEKPDPDSLVFGATFTDHMLTVEWSSASGWEKPHI
KPFGNLPIHPAASVLHYAVELFEGLKAFRGVDNKIRLFRPDLNMDRMCRSAVRTTLPMFDKEELLKCILQ
LLQIDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPSKALLFVILSPVGPYFSSGSFTPVSLWANPKYIRA
WKGGTGDCKMGGNYGASLLAQCEAVENGCQQVLWLYGKDNQITEVGTMNLFLYWINEDGEEELATPPLDG
IILPGVTRQSILELAQQWGEFKVCERHLTMDDLATALEGNRVKEMFGSGTACVVCPVSDILYKGQMLHIP
TMENGPKLASRILGKLTDIQYGRVESDWTIELP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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