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Report for CCDS34080.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34080.1 Public Homo sapiens 4 ARFIP1 24 110 108 CCDS HistoryNCBI Gene:27236Re-query CCDS DB by CCDS ID:34080.1Re-query CCDS DB by GeneID:27236See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34080.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000353617.7 ENSP00000296557.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000353617.7Link to Ensembl Protein Viewer:ENSP00000296557.4Re-query CCDS DB by Nucleotide ID:ENST00000353617Re-query CCDS DB by Protein ID:ENSP00000296557
Original member Current member EBI ENST00000451320.6 ENSP00000395083.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000451320.6Link to Ensembl Protein Viewer:ENSP00000395083.2Re-query CCDS DB by Nucleotide ID:ENST00000451320Re-query CCDS DB by Protein ID:ENSP00000395083
Original member Current member NCBI NM_001025595.3 NP_001020766.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001025595.3Link to Protein Sequence:NP_001020766.1Re-query CCDS DB by Nucleotide ID:NM_001025595Re-query CCDS DB by Protein ID:NP_001020766Link to BLAST:NP_001020766.1
Original member Current member NCBI NM_001287431.2 NP_001274360.1 Accepted alive Link to Nucleotide Sequence:NM_001287431.2Link to Protein Sequence:NP_001274360.1Re-query CCDS DB by Nucleotide ID:NM_001287431Re-query CCDS DB by Protein ID:NP_001274360Link to BLAST:NP_001274360.1
Original member Current member NCBI NM_001287432.2 NP_001274361.1 Accepted alive Link to Nucleotide Sequence:NM_001287432.2Link to Protein Sequence:NP_001274361.1Re-query CCDS DB by Nucleotide ID:NM_001287432Re-query CCDS DB by Protein ID:NP_001274361Link to BLAST:NP_001274361.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001020766.1 373 P53367-1 373 100% 0 0
NP_001274360.1 373 P53367-1 373 100% 0 0
NP_001274361.1 373 P53367-1 373 100% 0 0

Chromosomal Locations for CCDS 34080.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 152829634 152829726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 152863606 152863714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 152870753 152870848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 152872452 152872564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 152880963 152881184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 152882723 152882880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 152888133 152888307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 152910064 152910219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1122 nt):
ATGGCTCAAGAATCTCCCAAAAATTCAGCAGCAGAAATTCCAGTGACTAGTAATGGAGAAGTTGATGACT
CTCGTGAACATAGCTTTAATAGGGATTTGAAGCATTCATTACCATCTGGACTTGGTCTCTCAGAAACCCA
AATTACATCTCATGGCTTTGACAATACCAAAGAGGGTGTTATTGAAGCAGGAGCATTTCAAGGTTCCCCA
GCACCGCCACTGCCATCTGTTATGTCTCCTAGCAGGGTTGCAGCTAGTCGACTGGCTCAGCAAGGAAGTG
ATTTAATTGTTCCTGCAGGTGGCCAGAGAACACAGACAAAAAGTGGACCAGTTATTCTAGCAGATGAAAT
TAAAAATCCTGCAATGGAAAAGTTAGAACTTGTTAGAAAATGGAGTCTAAACACCTATAAGTGTACTCGA
CAGATTATCTCTGAGAAGCTAGGCCGTGGCTCAAGAACTGTGGACCTTGAACTTGAAGCTCAGATTGATA
TATTAAGGGATAACAAGAAAAAATATGAAAATATTTTAAAACTGGCTCAAACATTGTCGACCCAGCTTTT
CCAGATGGTACATACCCAAAGGCAACTTGGAGATGCATTTGCTGACCTGAGTTTGAAGTCACTAGAACTT
CATGAAGAATTTGGCTATAATGCCGATACCCAGAAACTGCTGGCTAAAAATGGAGAGACTCTTCTTGGGG
CCATTAATTTTTTCATTGCTAGTGTGAACACTTTGGTGAATAAAACCATTGAAGATACATTAATGACTGT
GAAACAGTATGAAAGTGCCAGGATTGAATATGATGCATATCGCACTGATTTGGAAGAACTGAATCTTGGA
CCACGTGACGCAAACACTCTGCCAAAGATTGAGCAGTCACAGCATCTCTTCCAAGCACATAAGGAAAAAT
ATGATAAAATGCGCAATGATGTTTCTGTCAAATTGAAATTTCTAGAAGAAAATAAGGTTAAAGTATTGCA
CAATCAGCTGGTCCTTTTCCACAATGCCATTGCCGCTTACTTTGCTGGGAATCAGAAGCAGCTTGAACAG
ACACTTAAACAGTTCCATATCAAATTGAAAACCCCTGGAGTGGATGCCCCATCTTGGCTTGAAGAACAGT
AA

Translation (373 aa):
MAQESPKNSAAEIPVTSNGEVDDSREHSFNRDLKHSLPSGLGLSETQITSHGFDNTKEGVIEAGAFQGSP
APPLPSVMSPSRVAASRLAQQGSDLIVPAGGQRTQTKSGPVILADEIKNPAMEKLELVRKWSLNTYKCTR
QIISEKLGRGSRTVDLELEAQIDILRDNKKKYENILKLAQTLSTQLFQMVHTQRQLGDAFADLSLKSLEL
HEEFGYNADTQKLLAKNGETLLGAINFFIASVNTLVNKTIEDTLMTVKQYESARIEYDAYRTDLEELNLG
PRDANTLPKIEQSQHLFQAHKEKYDKMRNDVSVKLKFLEENKVKVLHNQLVLFHNAIAAYFAGNQKQLEQ
TLKQFHIKLKTPGVDAPSWLEEQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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