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Report for CCDS88885.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88885.1 Public Mus musculus 16 Dnm1l 23 108 98 CCDS HistoryNCBI Gene:74006Re-query CCDS DB by CCDS ID:88885.1Re-query CCDS DB by GeneID:74006See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88885.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000230022.1 ENSMUSP00000155429.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000230022.1Link to Ensembl Protein Viewer:ENSMUSP00000155429.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000230022Re-query CCDS DB by Protein ID:ENSMUSP00000155429
Original member NCBI NM_001276341.1 NP_001263270.1 Updated not alive Link to Nucleotide Sequence:NM_001276341.1Link to Protein Sequence:NP_001263270.1Re-query CCDS DB by Nucleotide ID:NM_001276341Re-query CCDS DB by Protein ID:NP_001263270
Current member NCBI NM_001276341.2 NP_001263270.1 Accepted alive Link to Nucleotide Sequence:NM_001276341.2Link to Protein Sequence:NP_001263270.1Re-query CCDS DB by Nucleotide ID:NM_001276341Re-query CCDS DB by Protein ID:NP_001263270Link to BLAST:NP_001263270.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001263270.1 612 Q8K1M6-4 612 100% 0 0

Chromosomal Locations for CCDS 88885.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 16313987 16314043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16314264 16314423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16316334 16316443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16316602 16316778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16318445 16318477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16319452 16319508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16321584 16321676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16323330 16323419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16323622 16323777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16323975 16324095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16329803 16330009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16332001 16332132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16333829 16333949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16336853 16337015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16338593 16338679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16340996 16341067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16345998 16346000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1839 nt):
ATGCTTTACACAGATTTTGATGAAATTCGACAAGAAATTGAAAATGAAACTGAAAGAATTTCAGGAAATA
ATAAGGGGGTAAGCCCTGAGCCAATCCATCTCAAGGTTTTCTCGCCCAACGTTGTCAACCTGACACTTGT
GGATTTACCGGGAATGACCAAAGTACCTGTAGGCGATCAGCCCAAGGACATCGAGCTTCAGATCAGAGAA
CTTATTCTTCGGTTCATCAGTAATCCCAATTCCATTATCCTCGCCGTCACTGCTGCAAATACAGATATGG
CAACATCAGAAGCACTCAAGATTTCCAGAGAGGTAGATCCAGATGGGCGCAGAACTCTAGCTGTAATCAC
TAAACTTGATCTCATGGATGCGGGTACTGATGCCATGGATGTATTGATGGGAAGGGTTATTCCAGTCAAG
CTTGGAATAATTGGAGTAGTTAACAGAAGCCAACTGGATATTAACAATAAGAAGAGTGTAACTGATTCAA
TCCGTGATGAGTATGCTTTTCTTCAAAAGAAGTACCCATCTCTGGCCAACAGAAATGGAACAAAGTATCT
TGCTAGGACCCTGAATAGGTTACTTATGCATCATATCAGAGATTGTTTACCAGAGCTGAAAACAAGAATA
AATGTCTTAGCTGCTCAGTATCAGTCTCTTCTAAATAGCTATGGTGAACCGGTGGATGATAAAAGTGCTA
CTTTACTCCAGCTTATTACCAAATTTGCCACAGAGTATTGTAACACGATTGAAGGAACCGCAAAGTACAT
TGAAACTTCTGAGCTATGCGGTGGTGCTAGGATTTGTTATATTTTCCATGAGACTTTCGGGCGAACCTTA
GAATCTGTGGACCCACTAGGTGGCCTTAACACTATTGACATCCTGACTGCCATCAGAAATGCTACTGGCC
CCCGTCCTGCTTTATTTGTGCCTGAAGTTTCATTTGAGTTACTGGTCAAACGTCAGATTAAGCGTCTAGA
AGAGCCCAGCCTACGGTGTGTGGAGCTGGTCCATGAGGAGATGCAGAGGATCATTCAGCATTGTAGCAAT
TACAGCACACAGGAATTGTTACGGTTCCCTAAACTTCACGATGCCATAGTTGAAGTAGTGACCTGTCTTC
TTCGTAAAAGGTTGCCCGTGACAAATGAAATGGTGCATAACTTAGTGGCAATTGAGCTAGCGTATATCAA
CACAAAACACCCCGACTTTGCTGATGCCTGTGGGCTAATGAACAATAATATAGAGGAACAAAGAAGAAAC
AGGCTAGCAAGAGAGCTGCCTTCAGCTGGATCACGGGACAAGTTAATTCAGGACAACAGAAGAGAAACTA
AAAATGTCCCATCTGCAGGTGGTGGGATTGGAGACGGTGGTCAGGAACCAACAACAGGCAACTGGAGAGG
AATGCTGAAAACTTCAAAAGCTGAAGAATTACTTGCTGAAGAAAAATCAAAACCAATTCCAATTATGCCA
GCAAGTCCACAGAAAGGCCATGCTGTCAATTTGCTAGATGTGCCAGTTCCAGTTGCAAGAAAACTGTCTG
CCCGAGAACAGCGAGATTGTGAGGTTATTGAAAGACTTATCAAATCATATTTTCTAATTGTCAGAAAGAA
TATTCAAGACAGTGTCCCAAAGGCAGTAATGCATTTTTTGGTTAATCATGTGAAAGATACTCTTCAGAGT
GAACTGGTAGGGCAGCTGTATAAGTCATCCTTATTAGATGACCTTCTGACTGAATCCGAGGACATGGCCC
AACGAAGAAAAGAAGCAGCGGATATGCTGAAGGCATTACAAGGAGCCAGTCAAATTATTGCTGAAATCCG
AGAGACTCATCTTTGGTGA

Translation (612 aa):
MLYTDFDEIRQEIENETERISGNNKGVSPEPIHLKVFSPNVVNLTLVDLPGMTKVPVGDQPKDIELQIRE
LILRFISNPNSIILAVTAANTDMATSEALKISREVDPDGRRTLAVITKLDLMDAGTDAMDVLMGRVIPVK
LGIIGVVNRSQLDINNKKSVTDSIRDEYAFLQKKYPSLANRNGTKYLARTLNRLLMHHIRDCLPELKTRI
NVLAAQYQSLLNSYGEPVDDKSATLLQLITKFATEYCNTIEGTAKYIETSELCGGARICYIFHETFGRTL
ESVDPLGGLNTIDILTAIRNATGPRPALFVPEVSFELLVKRQIKRLEEPSLRCVELVHEEMQRIIQHCSN
YSTQELLRFPKLHDAIVEVVTCLLRKRLPVTNEMVHNLVAIELAYINTKHPDFADACGLMNNNIEEQRRN
RLARELPSAGSRDKLIQDNRRETKNVPSAGGGIGDGGQEPTTGNWRGMLKTSKAEELLAEEKSKPIPIMP
ASPQKGHAVNLLDVPVPVARKLSAREQRDCEVIERLIKSYFLIVRKNIQDSVPKAVMHFLVNHVKDTLQS
ELVGQLYKSSLLDDLLTESEDMAQRRKEAADMLKALQGASQIIAEIRETHLW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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