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Report for CCDS28484.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28484.1 Public Mus musculus 17 Mlst8 23 108 98 CCDS HistoryNCBI Gene:56716Re-query CCDS DB by CCDS ID:28484.1Re-query CCDS DB by GeneID:56716See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28484.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000070888.13 ENSMUSP00000065004.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000070888.13Link to Ensembl Protein Viewer:ENSMUSP00000065004.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000070888Re-query CCDS DB by Protein ID:ENSMUSP00000065004
Original member Current member EBI ENSMUST00000179163.2 ENSMUSP00000136287.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179163.2Link to Ensembl Protein Viewer:ENSMUSP00000136287.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179163Re-query CCDS DB by Protein ID:ENSMUSP00000136287
Original member Current member EBI ENSMUST00000234686.1 ENSMUSP00000157137.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000234686.1Link to Ensembl Protein Viewer:ENSMUSP00000157137.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000234686Re-query CCDS DB by Protein ID:ENSMUSP00000157137
Original member Current member EBI ENSMUST00000234335.1 ENSMUSP00000157301.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000234335.1Link to Ensembl Protein Viewer:ENSMUSP00000157301.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000234335Re-query CCDS DB by Protein ID:ENSMUSP00000157301
Original member Current member NCBI NM_001252463.1 NP_001239392.1 Accepted alive Link to Nucleotide Sequence:NM_001252463.1Link to Protein Sequence:NP_001239392.1Re-query CCDS DB by Nucleotide ID:NM_001252463Re-query CCDS DB by Protein ID:NP_001239392Link to BLAST:NP_001239392.1
Original member Current member NCBI NM_001252464.1 NP_001239393.1 Accepted alive Link to Nucleotide Sequence:NM_001252464.1Link to Protein Sequence:NP_001239393.1Re-query CCDS DB by Nucleotide ID:NM_001252464Re-query CCDS DB by Protein ID:NP_001239393Link to BLAST:NP_001239393.1
Original member Current member NCBI NM_019988.5 NP_064372.2 Accepted alive Link to Nucleotide Sequence:NM_019988.5Link to Protein Sequence:NP_064372.2Re-query CCDS DB by Nucleotide ID:NM_019988Re-query CCDS DB by Protein ID:NP_064372Link to BLAST:NP_064372.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001239392.1 326 Q9DCJ1 326 100% 0 0
NP_001239393.1 326 Q9DCJ1 326 100% 0 0
NP_064372.2 326 Q9DCJ1 326 100% 0 0

Chromosomal Locations for CCDS 28484.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 24475833 24475951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24476046 24476209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24476325 24476449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24477181 24477333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24477430 24477505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24477863 24478025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24478111 24478162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24478320 24478448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (981 nt):
ATGAATACCACCCCAGGCACAGTGGGCAGTGACCCTGTCATCTTAGCAACTGCAGGCTATGACCACACGG
TGCGCTTTTGGCAGGCTCACAGTGGAATCTGCACTCGAACAGTGCAGCATCAGGACTCTCAGGTAAATGC
ATTGGAGATTACTCCGGACCGAAGCATGATTGCTGCTGCAGGTTACCAACATATCCGCATGTATGATCTC
AACTCCAATAACCCCAACCCCATCATCAGTTATGACGGAGTCAGTAAGAACATTGCATCAGTGGGCTTTC
ACGAGGATGGTCGCTGGATGTATACAGGTGGCGAGGACTGCACAGCTCGCATCTGGGACCTCAGGTCCCG
GAACTTGCAGTGTCAGCGTATCTTCCAGGTGAACGCACCCATTAATTGCGTGTGTCTGCATCCCAACCAG
GCAGAACTCATTGTGGGTGATCAGAGCGGTGCTATCCACATCTGGGACCTGAAGACAGACCACAATGAGC
AGCTGATTCCCGAGCCTGAGTCTTCCATCACGTCTGCTCACATCGACCCAGATGCTAGCTACATGGCAGC
CGTCAATAGTGCCGGAAACTGCTATGTCTGGAACCTGACAGGGGGCATTGGTGACGATGTGACTCAGCTC
ATCCCTAAGACCAAGATCCCAGCCCATACACGCTATGCCCTGCAATGCCGCTTCAGCCCTGATTCCACGC
TTCTTGCCACCTGTTCAGCTGACCAGACATGTAAAATCTGGAGGACATCCAACTTCTCCCTGATGACAGA
GCTTAGCATCAAGAGTAGTAACCCTGGAGAGTCATCCCGTGGCTGGATGTGGGGCTGTGCCTTCTCAGGG
GATTCCCAGTACATTGTCACAGCTTCTTCTGACAACCTAGCCCGGCTCTGGTGTGTAGAGACTGGAGAAA
TCAAGAGAGAGTATGGTGGCCATCAGAAAGCTGTCGTCTGCTTGGCCTTCAATGACAGTGTGCTGGGTTA
G

Translation (326 aa):
MNTTPGTVGSDPVILATAGYDHTVRFWQAHSGICTRTVQHQDSQVNALEITPDRSMIAAAGYQHIRMYDL
NSNNPNPIISYDGVSKNIASVGFHEDGRWMYTGGEDCTARIWDLRSRNLQCQRIFQVNAPINCVCLHPNQ
AELIVGDQSGAIHIWDLKTDHNEQLIPEPESSITSAHIDPDASYMAAVNSAGNCYVWNLTGGIGDDVTQL
IPKTKIPAHTRYALQCRFSPDSTLLATCSADQTCKIWRTSNFSLMTELSIKSSNPGESSRGWMWGCAFSG
DSQYIVTASSDNLARLWCVETGEIKREYGGHQKAVVCLAFNDSVLG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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