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Report for CCDS3052.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3052.1 Public Homo sapiens 3 RAB7A 24 110 108 CCDS HistoryNCBI Gene:7879Re-query CCDS DB by CCDS ID:3052.1Re-query CCDS DB by GeneID:7879See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3052.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000265062.8 ENSP00000265062.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000265062.8Link to Ensembl Protein Viewer:ENSP00000265062.3Re-query CCDS DB by Nucleotide ID:ENST00000265062Re-query CCDS DB by Protein ID:ENSP00000265062
Original member Current member EBI ENST00000676214.1 ENSP00000501618.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000676214.1Link to Ensembl Protein Viewer:ENSP00000501618.1Re-query CCDS DB by Nucleotide ID:ENST00000676214Re-query CCDS DB by Protein ID:ENSP00000501618
Original member Current member EBI ENST00000675497.1 ENSP00000502000.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000675497.1Link to Ensembl Protein Viewer:ENSP00000502000.1Re-query CCDS DB by Nucleotide ID:ENST00000675497Re-query CCDS DB by Protein ID:ENSP00000502000
Original member Current member EBI ENST00000674589.1 ENSP00000502088.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000674589.1Link to Ensembl Protein Viewer:ENSP00000502088.1Re-query CCDS DB by Nucleotide ID:ENST00000674589Re-query CCDS DB by Protein ID:ENSP00000502088
Original member Current member EBI ENST00000675342.1 ENSP00000502486.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000675342.1Link to Ensembl Protein Viewer:ENSP00000502486.1Re-query CCDS DB by Nucleotide ID:ENST00000675342Re-query CCDS DB by Protein ID:ENSP00000502486
Original member Current member NCBI NM_004637.6 NP_004628.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004637.6Link to Protein Sequence:NP_004628.4Re-query CCDS DB by Nucleotide ID:NM_004637Re-query CCDS DB by Protein ID:NP_004628Link to BLAST:NP_004628.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004628.4 207 P51149 207 100% 0 0

Chromosomal Locations for CCDS 3052.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 128795368 128795420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 128797943 128798069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 128806372 128806590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 128807543 128807671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 128813327 128813422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (624 nt):
ATGACCTCTAGGAAGAAAGTGTTGCTGAAGGTTATCATCCTGGGAGATTCTGGAGTCGGGAAGACATCAC
TCATGAACCAGTATGTGAATAAGAAATTCAGCAATCAGTACAAAGCCACAATAGGAGCTGACTTTCTGAC
CAAGGAGGTGATGGTGGATGACAGGCTAGTCACAATGCAGATATGGGACACAGCAGGACAGGAACGGTTC
CAGTCTCTCGGTGTGGCCTTCTACAGAGGTGCAGACTGCTGCGTTCTGGTATTTGATGTGACTGCCCCCA
ACACATTCAAAACCCTAGATAGCTGGAGAGATGAGTTTCTCATCCAGGCCAGTCCCCGAGATCCTGAAAA
CTTCCCATTTGTTGTGTTGGGAAACAAGATTGACCTCGAAAACAGACAAGTGGCCACAAAGCGGGCACAG
GCCTGGTGCTACAGCAAAAACAACATTCCCTACTTTGAGACCAGTGCCAAGGAGGCCATCAACGTGGAGC
AGGCGTTCCAGACGATTGCACGGAATGCACTTAAGCAGGAAACGGAGGTGGAGCTGTACAACGAATTTCC
TGAACCTATCAAACTGGACAAGAATGACCGGGCCAAGGCCTCGGCAGAAAGCTGCAGTTGCTGA

Translation (207 aa):
MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERF
QSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQ
AWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKLDKNDRAKASAESCSC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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