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Report for CCDS39397.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39397.1 Public Mus musculus 5 Polr1d 23 108 98 CCDS HistoryNCBI Gene:20018Re-query CCDS DB by CCDS ID:39397.1Re-query CCDS DB by GeneID:20018See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39397.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110557.4 ENSMUSP00000106186.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110557.4Link to Ensembl Protein Viewer:ENSMUSP00000106186.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110557Re-query CCDS DB by Protein ID:ENSMUSP00000106186
Original member Current member NCBI NM_181730.4 NP_859419.1 Accepted alive Link to Nucleotide Sequence:NM_181730.4Link to Protein Sequence:NP_859419.1Re-query CCDS DB by Nucleotide ID:NM_181730Re-query CCDS DB by Protein ID:NP_859419Link to BLAST:NP_859419.1

Chromosomal Locations for CCDS 39397.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 147077668 147077693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147101229 147101303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147110648 147110927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (381 nt):
ATGGAAGACGATCAGGAGCTGGAGAGGAAAGCCATAGAGGAATTGCTAAAGGAGGCAAAGCGTGGGAAAA
CCAGAGCGGAGACAATGGGGCCGATGGGCTGGATGAAGTGTCCTCTTGCTGGTACAAATAAAAGATTCCT
AATTAACACAATTAAGAACACACTGCCCTCCCATAAAGAGCAAGACCATGAACAAAAAGAGGGCAGTAAG
GAGCCTGGCAAAAGCCAAGACCAGAAGGAAGCAAGTGGGAAGAAGTACCGAAGTCACTCGTACAAGCGCA
GCCTTCACTCGTCCCGGGGCTCCGCAGGCTGCTCTCCTCCACGGAAGCGGACCTCCCGGACCTCCCGGGA
CAAGTGCGACCCACGGCCCAGCAGGCGATGA

Translation (126 aa):
MEDDQELERKAIEELLKEAKRGKTRAETMGPMGWMKCPLAGTNKRFLINTIKNTLPSHKEQDHEQKEGSK
EPGKSQDQKEASGKKYRSHSYKRSLHSSRGSAGCSPPRKRTSRTSRDKCDPRPSRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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