NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS23143.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23143.1 Public Mus musculus 9 Apoa5 23 108 98 CCDS HistoryNCBI Gene:66113Re-query CCDS DB by CCDS ID:23143.1Re-query CCDS DB by GeneID:66113See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23143.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034584.3 ENSMUSP00000034584.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034584.3Link to Ensembl Protein Viewer:ENSMUSP00000034584.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000034584Re-query CCDS DB by Protein ID:ENSMUSP00000034584
Original member Current member EBI ENSMUST00000121598.7 ENSMUSP00000113413.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121598.7Link to Ensembl Protein Viewer:ENSMUSP00000113413.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121598Re-query CCDS DB by Protein ID:ENSMUSP00000113413
Original member Current member NCBI NM_001348095.1 NP_001335024.1 Accepted alive Link to Nucleotide Sequence:NM_001348095.1Link to Protein Sequence:NP_001335024.1Re-query CCDS DB by Nucleotide ID:NM_001348095Re-query CCDS DB by Protein ID:NP_001335024Link to BLAST:NP_001335024.1
Original member Current member NCBI NM_080434.4 NP_536682.2 Accepted alive Link to Nucleotide Sequence:NM_080434.4Link to Protein Sequence:NP_536682.2Re-query CCDS DB by Nucleotide ID:NM_080434Re-query CCDS DB by Protein ID:NP_536682Link to BLAST:NP_536682.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001335024.1 368 Q8C7G5 368 100% 0 0
NP_536682.2 368 Q8C7G5 368 100% 0 0

Chromosomal Locations for CCDS 23143.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 46269098 46269137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 46269226 46269325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 46269768 46270734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1107 nt):
ATGGCTGCAGTCATCACTTGGGCCCTCGCCCTCCTCGCAGTGTTCGCAAGCACTCAGGCACGGAAGAGCC
TCTGGGACTACTTCAGCCAAAACAGTTGGAGCAAAGGCGTGATGGGCCAGCCACAGAAGCTGGCACAGGA
GAACCTGAAAGGCAGCTTCGAGCAAGACCTCTACAATATGAACAATTACCTAGAAAAGCTGGGACCCTTG
AGAGGGCCTGGGAAGGAGCCTCCTCTGCTGGCCCAGGACCCAGAAGGCATTCGGAAACAGCTGCAGCAGG
AGCTGGGGGAAGTGAGCTCGCGCCTGGAGCCCTACATGGCTGCGAAGCACCAGCAGGTAGGCTGGAACTT
GGAGGGCCTGAGGCAGCAGTTGAAACCCTACACGGCGGAGCTGATGGAGCAGGTGGGCCTGAGTGTGCAG
GAGCTGCAGGAGCAGCTGCGCGTGGTGGGAGAAGACACCAAGGCTCAGCTCCTGGGGGGCGTGGACGAGG
CGCTGAACCTGCTGCAGGACATGCAGAGTCGAGTGCTGCACCATACCGACCGAGTCAAAGAGCTCTTCCA
CCCTTACGCAGAACGCTTGGTGACTGGAATTGGGCACCACGTGCAGGAGCTGCACCGCAGTGTCGCTCCT
CACGCAGCTGCCAGCCCCGCGCGACTCAGTCGCTGCGTGCAGACTCTGTCCCACAAACTCACACGTAAGG
CGAAGGACCTGCACACCAGCATCCAACGCAACCTGGACCAGCTGCGCGATGAGCTCAGTGCCTTCATCCG
CGTCAGCACAGATGGGGCGGAAGATGGAGATTCCCTGGACCCTCAGGCTCTCTCCGAGGAGGTCCGCCAG
AGACTGCAGGCTTTTCGGCATGACACCTACCTGCAGATTGCTGCATTTACTCAGGCCATTGACCAGGAGA
CAGAGGAAATTCAGCACCAGCTAGCCCCACCCCCGCCTAGCCACAGCGCCTTCGCTCCTGAGCTGGGACA
CTCAGACAGTAATAAGGCCCTGAGCAGACTGCAGAGCCGACTGGACGACCTGTGGGAAGATATTGCCTAT
GGCCTTCAAGACCAGGGTCATAGTCATTTGAGTGACCCTGAGGGTCACTCCGGTTAA

Translation (368 aa):
MAAVITWALALLAVFASTQARKSLWDYFSQNSWSKGVMGQPQKLAQENLKGSFEQDLYNMNNYLEKLGPL
RGPGKEPPLLAQDPEGIRKQLQQELGEVSSRLEPYMAAKHQQVGWNLEGLRQQLKPYTAELMEQVGLSVQ
ELQEQLRVVGEDTKAQLLGGVDEALNLLQDMQSRVLHHTDRVKELFHPYAERLVTGIGHHVQELHRSVAP
HAAASPARLSRCVQTLSHKLTRKAKDLHTSIQRNLDQLRDELSAFIRVSTDGAEDGDSLDPQALSEEVRQ
RLQAFRHDTYLQIAAFTQAIDQETEEIQHQLAPPPPSHSAFAPELGHSDSNKALSRLQSRLDDLWEDIAY
GLQDQGHSHLSDPEGHSG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH