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Report for CCDS25542.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25542.1 Public Mus musculus 11 Cyb561 23 108 98 CCDS HistoryNCBI Gene:13056Re-query CCDS DB by CCDS ID:25542.1Re-query CCDS DB by GeneID:13056See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25542.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019734.10 ENSMUSP00000019734.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019734.10Link to Ensembl Protein Viewer:ENSMUSP00000019734.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000019734Re-query CCDS DB by Protein ID:ENSMUSP00000019734
Original member Current member NCBI NM_001356374.1 NP_001343303.1 Accepted alive Link to Nucleotide Sequence:NM_001356374.1Link to Protein Sequence:NP_001343303.1Re-query CCDS DB by Nucleotide ID:NM_001356374Re-query CCDS DB by Protein ID:NP_001343303Link to BLAST:NP_001343303.1
Original member Current member NCBI NM_007805.5 NP_031831.2 Accepted alive Link to Nucleotide Sequence:NM_007805.5Link to Protein Sequence:NP_031831.2Re-query CCDS DB by Nucleotide ID:NM_007805Re-query CCDS DB by Protein ID:NP_031831Link to BLAST:NP_031831.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343303.1 250 Q60720 250 100% 0 0
NP_031831.2 250 Q60720 250 100% 0 0

Chromosomal Locations for CCDS 25542.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 105935375 105935567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 105935752 105935909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 105936182 105936285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 105936555 105936653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 105937629 105937827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (753 nt):
ATGGAGCACAGTTCTGCGTCTGTCCCTGCTGCACTGCCGTACTATGTGGCCTTCTCCCAGCTGCTGGGCC
TCACTGTAGTGGCTGTGACTGGTGCGTGGCTGGGTCTGTACCGAGGTGGCATTGCCTGGGAAAGCTCCCT
GCAGTTTAATGTGCACCCGCTCTGCATGGTCATAGGCATGATCTTCCTTCAAGGAGATGCTCTGCTGGTG
TACCGTGTCTTCAGAAGAGAAGCCAAACGCACGACCAAGATCTTGCATGGGCTGCTGCACGTCTTCGCCT
TCATCATCGCCCTGGTGGGGTTGGTGGCTGTGTTCGACTACCACAAGAAGAAGGGCTATGCAGACCTGTA
CAGCTTGCACAGCTGGTGTGGGATCTTAGTCTTTGTTCTGTACTTTGTGCAGTGGCTCGTGGGTTTCAGC
TTCTTCCTGTTCCCTGGAGCTTCATTCTCTCTGCGGAGCCGCTACCGCCCTCAGCACATTTTCTTTGGTG
CCACCATCTTCCTCTTCTCTGTGGGCACAGCCCTACTGGGCCTGAAGGAGGCCCTGCTGTTTAAATTGGG
GTCCAAGTACAGCACGTTTGAACCTGAGGGGGTGCTGGCCAACGTGCTAGGCTTGCTGCTGGTCTGTTTT
GGGGTGGTTGTGCTCTACATCTTGGCTCAGGCTGACTGGAAGCGGCCTTCCCAGGCTGAAGAGCAAGCCC
TCTCCATGGACTTCAAGACACTCACGGAGGGAGACAGCCCCAGTCCCCAGTGA

Translation (250 aa):
MEHSSASVPAALPYYVAFSQLLGLTVVAVTGAWLGLYRGGIAWESSLQFNVHPLCMVIGMIFLQGDALLV
YRVFRREAKRTTKILHGLLHVFAFIIALVGLVAVFDYHKKKGYADLYSLHSWCGILVFVLYFVQWLVGFS
FFLFPGASFSLRSRYRPQHIFFGATIFLFSVGTALLGLKEALLFKLGSKYSTFEPEGVLANVLGLLLVCF
GVVVLYILAQADWKRPSQAEEQALSMDFKTLTEGDSPSPQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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