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Report for CCDS56849.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56849.1 Public Mus musculus 12 Cipc 23 108 98 CCDS HistoryNCBI Gene:217732Re-query CCDS DB by CCDS ID:56849.1Re-query CCDS DB by GeneID:217732See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 56849.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038369.10 ENSMUSP00000038630.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038369.10Link to Ensembl Protein Viewer:ENSMUSP00000038630.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000038369Re-query CCDS DB by Protein ID:ENSMUSP00000038630
Original member Current member EBI ENSMUST00000189246.6 ENSMUSP00000140266.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000189246.6Link to Ensembl Protein Viewer:ENSMUSP00000140266.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000189246Re-query CCDS DB by Protein ID:ENSMUSP00000140266
Original member NCBI NM_001289430.1 NP_001276359.1 Updated not alive Link to Nucleotide Sequence:NM_001289430.1Link to Protein Sequence:NP_001276359.1Re-query CCDS DB by Nucleotide ID:NM_001289430Re-query CCDS DB by Protein ID:NP_001276359
Current member NCBI NM_001289430.2 NP_001276359.1 Accepted alive Link to Nucleotide Sequence:NM_001289430.2Link to Protein Sequence:NP_001276359.1Re-query CCDS DB by Nucleotide ID:NM_001289430Re-query CCDS DB by Protein ID:NP_001276359Link to BLAST:NP_001276359.1
Original member Current member NCBI NM_173735.3 NP_776096.2 Accepted alive Link to Nucleotide Sequence:NM_173735.3Link to Protein Sequence:NP_776096.2Re-query CCDS DB by Nucleotide ID:NM_173735Re-query CCDS DB by Protein ID:NP_776096Link to BLAST:NP_776096.2

Chromosomal Locations for CCDS 56849.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 86952754 86952931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 86960272 86960441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 86961780 86962667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1236 nt):
ATGCAAAGAGTACCTGTGCTCCGTCTTCCGGCCATCTTAGACATGGAGAGGAAAATCCCATCCAGAGAGA
GCCCCAGAAGACTGTCCGCCAAGCCAGGCCGAGGCACGGAGATGAAGAAGCTAGCGCGACCACTTGGCGT
GGTGGCAGCTGACTCAGACAAGGACTCTGGCTTCTCAGATGGGAGCTCAGAATGTTTGAGCTCCGCAGAG
CAGATGGAGTCAGAGGACATGCTGAGCGCCTTGGGCTGCAAGAGAGAAGACAAGCGGAGGCAGCCCTCCA
AAGCTGCGGACACTGCCCTCCCCACGCTGCCCCCTATGGTCGTCATGAAGAGCGTGCTGGTCAAGCAGGG
CAGCAGCTCCTCCCAGCTTCAGTCCTGGACTGTCCAGCCCTCCTTTGAAGTGATCTCAGCGCAGCCACAG
CTCTTTGTCCTTCATCCACCTGTGCCATCTCCTGTCAGCTCATGCCAGACTGGTGAGAAAAAGTCAGAAT
CCAGAAACTACTTGCCCATTCTAAATTCTTATACCAAAATAGCCCCCCACCCAGGCAAGAGGGGCCTCAA
TTCAGAAGACAGAGGAACAAGTGGGGTATCGAAGAAACTCTGCACGGAGAGACCGGGGCCAAGCCTGTCT
TCCAGTGAGCCAGCCAAGACTGGCCGAGTATTATCCAGTCCTTCCACTCCAGCCCCACCCAGCTCCAAAC
TCACTGAGGACTCCACTCTGCAAGGAGTTCCCTCCCTTGGGGCTGGCGGAAGTCCACAGACTCTTCAGCC
TGTGTCCAGCAGCCATGTGGCTAAAGCTCCCAGTCTGACTTTGGCTTCGCCCGCCAGCCCTGTGTGTGCG
TCAGACAGCACTCTGCATGGCCTAGAGAGCAGCTCCCCTCTCTCCCCACTGTCAGCCAGTTACACTTCAC
CTCTGTGGGCTGCGGAGCACCTCTGCCGCAGCCCAGACATCTTCTCCGAGCAGAGGCAGAACAAGCATAG
GCGCTTTCAGAATACCTTAGTGGTCCTCCACAAGTCTGGTTTGCTGGAGATCACTCTGAAAACCAAGGAG
TTGATTCGTCAGAACCAAGCAACTCAGGCAGAGCTGGACCAGCTGAAGGAGCAAACCCAGATGTTTATAG
AGGCCACCAAGAGCAGGGCTCCTCAGGCATGGGCCAAGTTGCAGGCATCACTAACATCTGGGTCCAGTCA
TTCAGGCAGTGACCTAGACACGTTGTCTGATCACCCAGACGTATAG

Translation (411 aa):
MQRVPVLRLPAILDMERKIPSRESPRRLSAKPGRGTEMKKLARPLGVVAADSDKDSGFSDGSSECLSSAE
QMESEDMLSALGCKREDKRRQPSKAADTALPTLPPMVVMKSVLVKQGSSSSQLQSWTVQPSFEVISAQPQ
LFVLHPPVPSPVSSCQTGEKKSESRNYLPILNSYTKIAPHPGKRGLNSEDRGTSGVSKKLCTERPGPSLS
SSEPAKTGRVLSSPSTPAPPSSKLTEDSTLQGVPSLGAGGSPQTLQPVSSSHVAKAPSLTLASPASPVCA
SDSTLHGLESSSPLSPLSASYTSPLWAAEHLCRSPDIFSEQRQNKHRRFQNTLVVLHKSGLLEITLKTKE
LIRQNQATQAELDQLKEQTQMFIEATKSRAPQAWAKLQASLTSGSSHSGSDLDTLSDHPDV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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