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Report for CCDS28094.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28094.1 Public Mus musculus 16 Plaat1 23 108 98 CCDS HistoryNCBI Gene:27281Re-query CCDS DB by CCDS ID:28094.1Re-query CCDS DB by GeneID:27281See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28094.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000089824.10 ENSMUSP00000087257.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000089824.10Link to Ensembl Protein Viewer:ENSMUSP00000087257.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000089824Re-query CCDS DB by Protein ID:ENSMUSP00000087257
Original member Current member EBI ENSMUST00000162747.7 ENSMUSP00000123809.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162747.7Link to Ensembl Protein Viewer:ENSMUSP00000123809.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162747Re-query CCDS DB by Protein ID:ENSMUSP00000123809
Original member NCBI NM_001357092.1 NP_001344021.1 Updated not alive Link to Nucleotide Sequence:NM_001357092.1Link to Protein Sequence:NP_001344021.1Re-query CCDS DB by Nucleotide ID:NM_001357092Re-query CCDS DB by Protein ID:NP_001344021
Current member NCBI NM_001357092.2 NP_001344021.1 Accepted alive Link to Nucleotide Sequence:NM_001357092.2Link to Protein Sequence:NP_001344021.1Re-query CCDS DB by Nucleotide ID:NM_001357092Re-query CCDS DB by Protein ID:NP_001344021Link to BLAST:NP_001344021.1
Original member NCBI NM_001361289.1 NP_001348218.1 Updated not alive Link to Nucleotide Sequence:NM_001361289.1Link to Protein Sequence:NP_001348218.1Re-query CCDS DB by Nucleotide ID:NM_001361289Re-query CCDS DB by Protein ID:NP_001348218
Current member NCBI NM_001361289.2 NP_001348218.1 Accepted alive Link to Nucleotide Sequence:NM_001361289.2Link to Protein Sequence:NP_001348218.1Re-query CCDS DB by Nucleotide ID:NM_001361289Re-query CCDS DB by Protein ID:NP_001348218Link to BLAST:NP_001348218.1
Original member NCBI NM_013751.6 NP_038779.2 Updated not alive Link to Nucleotide Sequence:NM_013751.6Link to Protein Sequence:NP_038779.2Re-query CCDS DB by Nucleotide ID:NM_013751Re-query CCDS DB by Protein ID:NP_038779
Current member NCBI NM_013751.7 NP_038779.2 Accepted alive Link to Nucleotide Sequence:NM_013751.7Link to Protein Sequence:NP_038779.2Re-query CCDS DB by Nucleotide ID:NM_013751Re-query CCDS DB by Protein ID:NP_038779Link to BLAST:NP_038779.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344021.1 167 Q9QZU4-1 167 99.4012% 0 1
NP_001348218.1 167 Q9QZU4-1 167 99.4012% 0 1
NP_038779.2 167 Q9QZU4-1 167 99.4012% 0 1

Chromosomal Locations for CCDS 28094.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 29217612 29217750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29220309 29220574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29228136 29228234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (504 nt):
ATGGCGGTAAATGATTGCTTCAGTCTGACCTATCCTCACAACCCACACCCAGGAGACTTGATTGAAGTGT
TCCGTCCTTGCTATCAGCACTGGGCACTGTACTTGGGTGATGGCTACGTGATCAACATTGCACCTATAGA
TGGCATTCGCTCATCATTTACAAGTGCTAAGTCCGTGTTCAGCACAAAGGCCTTGGTGAAAATGCAGCTT
TTGAAGGATGTTGTGGGAAATGACACATACAGAATAAATAACAAGTACGACACAACATACCCTCCTCTTC
CTGTGGAGGAGGTGATACAACGGTCAGAGTTCGCTATTGGGCAGGAAGTAGCCTATGACTTGCTGGTCAA
CAACTGTGAGCATTTTGTAACCTTGCTGCGCTATGGAGAAGGAGTGTCAGAGCAGGCCAACCGAGCAATC
GGCACCATCGGATTGGTGGCAGCTGGTATTGATATCTTCACATTCCTCGGCTTGTTTCCCAAAAGACAAA
GAACGAAATATTAG

Translation (167 aa):
MAVNDCFSLTYPHNPHPGDLIEVFRPCYQHWALYLGDGYVINIAPIDGIRSSFTSAKSVFSTKALVKMQL
LKDVVGNDTYRINNKYDTTYPPLPVEEVIQRSEFAIGQEVAYDLLVNNCEHFVTLLRYGEGVSEQANRAI
GTIGLVAAGIDIFTFLGLFPKRQRTKY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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