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Report for CCDS6592.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6592.1 Public Homo sapiens 9 SPAG8 24 110 108 CCDS HistoryNCBI Gene:26206Re-query CCDS DB by CCDS ID:6592.1Re-query CCDS DB by GeneID:26206See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6592.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000340291.6 ENSP00000340982.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000340291.6Link to Ensembl Protein Viewer:ENSP00000340982.2Re-query CCDS DB by Nucleotide ID:ENST00000340291Re-query CCDS DB by Protein ID:ENSP00000340982
Original member Current member NCBI NM_172312.2 NP_758516.1 Accepted alive Link to Nucleotide Sequence:NM_172312.2Link to Protein Sequence:NP_758516.1Re-query CCDS DB by Nucleotide ID:NM_172312Re-query CCDS DB by Protein ID:NP_758516Link to BLAST:NP_758516.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_758516.1 501 Q99932-2 501 100% 0 0

Chromosomal Locations for CCDS 6592.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 35808173 35808306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35809404 35809512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35810247 35810309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35810439 35810553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35810637 35810682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35810883 35811057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35811182 35812001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35812104 35812147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1506 nt):
ATGGAGACCAACGAGTCTACGGAGGGATCGCGGTCGCGGTCGCGATCTTTAGACATACAGCCCAGCTCCG
AAGGACTGGGGCCCACTTCGGAACCGTTTCCTTCTTCAGATGACAGTCCCAGGTCGGCCCTGGCAGCTGC
AACCGCAGCAGCTGCAGCGGCTGCATCAGCTGCTGCAGCTACTGCAGCCTTCACCACTGCCAAAGCAGCT
GCATTATCTACAAAGACCCCAGCGCCCTGTTCTGAGTTCATGGAGCCGTCCTCTGACCCCAGCCTTCTTG
GGGAGCCCTGTGCGGGACCCGGCTTTACCCACAATATAGCCCATGGGAGTCTTGGCTTTGAGCCCGTCTA
TGTTTCCTGTATTGCTCAGGACACTTGCACTACAACTGACCATAGTTCTAATCCTGGCCCTGTTCCAGGC
TCTAGCTCTGGGCCTGTTCTTGGTTCCAGCTCAGGTGCTGGCCATGGCTCTGGCTCTGGCTCTGGTCCTG
GCTGTGGCTCTGTCCCTGGCTCTGGCTCTGGTCCTGGTCCTGGCTCTGGTCCTGGCTCTGGTCCTGGTCA
TGGCTCTGGCTCTCATCCTGGTCCTGCCTCTGGGCCTGGTCCAGACACTGGCCCTGACTCTGAGCTCAGC
CCCTGTATTCCTCCAGGGTTCAGAAACCTGGTGGCAGATCGGGTCCCTAACTATACCTCCTGGAGTCAGC
ACTGCCCCTGGGAGCCCCAGAAACAACCACCTTGGGAATTTTTGCAAGTCTTAGAACCGGGTGCCCGAGG
ACTATGGAAACCCCCAGACATTAAAGGGAAGCTTATGGTTTGCTATGAAACTTTGCCGCGGGGCCAGTGC
CTCCTCTACAACTGGGAGGAAGAGAGAGCCACCAACCACCTGGATCAAGTCCCAAGCATGCAGGATGGCT
CTGAGAGTTTTTTCTTCCGACACGGACACCGGGGACTGCTGACTATGCAACTAAAGTCACCCATGCCCTC
CAGCACCACCCAGAAAGACTCGTACCAGCCACCAGGAAACGTCTATTGGCCACTTCGAGGGAAGCGTGAA
GCCATGCTGGAGATGCTCCTGCAGCATCAGATCTGTAAAGAGGTGCAGGCAGAACAGGAACCCACAAGGA
AGCTCTTCGAGGTTGAGTCTGTGACACACCATGACTACCGAATGGAGCTGGCACAAGCAGGGACTCCTGC
CCCAACAAAGCCTCACGACTACCGCCAGGAGCAACCTGAGACCTTCTGGATACAGAGGGCACCACAGCTG
CCGACATGGTGGCCATTGCCCACCCAGGTACCAGCAGCAGAAGACTATCTGACTTGGAAAGAATGGGGGT
TTACAGGAGTCCAGGAGGTCCTTTCCGCTCTCCTAAGAGCCACACCTGGTGAATACTCAGTAAACATTTG
CGGAATGAATGAACACCCTGTCTGCAGCAGGACATGGACAAATAGGCTCTGCCATCAGGAAATGGGAAGC
AAGAAAACGGTAACTCAAGAGGACAGAGGCTGGTGA

Translation (501 aa):
METNESTEGSRSRSRSLDIQPSSEGLGPTSEPFPSSDDSPRSALAAATAAAAAAASAAAATAAFTTAKAA
ALSTKTPAPCSEFMEPSSDPSLLGEPCAGPGFTHNIAHGSLGFEPVYVSCIAQDTCTTTDHSSNPGPVPG
SSSGPVLGSSSGAGHGSGSGSGPGCGSVPGSGSGPGPGSGPGSGPGHGSGSHPGPASGPGPDTGPDSELS
PCIPPGFRNLVADRVPNYTSWSQHCPWEPQKQPPWEFLQVLEPGARGLWKPPDIKGKLMVCYETLPRGQC
LLYNWEEERATNHLDQVPSMQDGSESFFFRHGHRGLLTMQLKSPMPSSTTQKDSYQPPGNVYWPLRGKRE
AMLEMLLQHQICKEVQAEQEPTRKLFEVESVTHHDYRMELAQAGTPAPTKPHDYRQEQPETFWIQRAPQL
PTWWPLPTQVPAAEDYLTWKEWGFTGVQEVLSALLRATPGEYSVNICGMNEHPVCSRTWTNRLCHQEMGS
KKTVTQEDRGW


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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