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Report for CCDS4352.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4352.1 Public Homo sapiens 5 SLU7 24 110 108 CCDS HistoryNCBI Gene:10569Re-query CCDS DB by CCDS ID:4352.1Re-query CCDS DB by GeneID:10569See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4352.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000297151.9 ENSP00000297151.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000297151.9Link to Ensembl Protein Viewer:ENSP00000297151.4Re-query CCDS DB by Nucleotide ID:ENST00000297151Re-query CCDS DB by Protein ID:ENSP00000297151
Original member Current member NCBI NM_001364518.2 NP_001351447.1 Accepted alive Link to Nucleotide Sequence:NM_001364518.2Link to Protein Sequence:NP_001351447.1Re-query CCDS DB by Nucleotide ID:NM_001364518Re-query CCDS DB by Protein ID:NP_001351447Link to BLAST:NP_001351447.1
Original member Current member NCBI NM_001364520.2 NP_001351449.1 Accepted alive Link to Nucleotide Sequence:NM_001364520.2Link to Protein Sequence:NP_001351449.1Re-query CCDS DB by Nucleotide ID:NM_001364520Re-query CCDS DB by Protein ID:NP_001351449Link to BLAST:NP_001351449.1
Original member Current member NCBI NM_001364521.2 NP_001351450.1 Accepted alive Link to Nucleotide Sequence:NM_001364521.2Link to Protein Sequence:NP_001351450.1Re-query CCDS DB by Nucleotide ID:NM_001364521Re-query CCDS DB by Protein ID:NP_001351450Link to BLAST:NP_001351450.1
Original member Current member NCBI NM_006425.5 NP_006416.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006425.5Link to Protein Sequence:NP_006416.3Re-query CCDS DB by Nucleotide ID:NM_006425Re-query CCDS DB by Protein ID:NP_006416Link to BLAST:NP_006416.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001351447.1 586 O95391 586 100% 0 0
NP_001351449.1 586 O95391 586 100% 0 0
NP_001351450.1 586 O95391 586 100% 0 0
NP_006416.3 586 O95391 586 100% 0 0

Chromosomal Locations for CCDS 4352.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 160403285 160403464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 160404440 160404556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 160404809 160404880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 160405031 160405135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 160406468 160406629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 160407476 160407615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 160407746 160407813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 160407971 160408068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 160408329 160408460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 160408650 160408697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 160412451 160412519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 160413456 160413620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 160413899 160413979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 160414319 160414472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 160415125 160415294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1761 nt):
ATGTCAGCCACAGTTGTAGATGCAGTTAATGCTGCACCCCTATCGGGGTCCAAAGAAATGAGTTTGGAAG
AACCAAAGAAGATGACCAGAGAGGACTGGAGAAAGAAGAAGGAGCTAGAAGAACAGCGAAAATTGGGCAA
TGCTCCTGCAGAAGTTGATGAAGAAGGAAAAGACATCAACCCCCATATTCCTCAGTATATTTCTTCAGTG
CCATGGTATATTGATCCTTCAAAAAGACCTACTTTAAAACACCAGAGACCACAACCAGAAAAACAAAAGC
AGTTCAGCTCATCTGGAGAATGGTACAAGAGGGGTGTAAAAGAGAATTCCATAATTACTAAGTACCGCAA
AGGAGCATGTGAAAATTGTGGGGCCATGACACACAAAAAGAAAGACTGCTTTGAGAGACCTAGGCGAGTT
GGAGCCAAATTTACAGGTACTAATATAGCTCCAGATGAACATGTCCAGCCTCAACTGATGTTTGACTATG
ATGGGAAGAGGGATCGGTGGAATGGCTACAATCCAGAAGAACACATGAAAATTGTTGAAGAGTATGCCAA
AGTTGATTTGGCAAAACGAACATTGAAAGCCCAGAAACTCCAAGAGGAATTAGCCTCAGGAAAATTAGTG
GAACAGGCTAATTCTCCAAAACACCAGTGGGGAGAAGAGGAACCAAATTCTCAGATGGAAAAAGATCATA
ATAGTGAAGATGAGGATGAAGATAAATATGCAGATGATATTGACATGCCTGGACAGAATTTTGACTCCAA
GAGACGAATTACTGTCCGGAATCTCAGGATTCGAGAAGATATTGCAAAATATTTGAGGAATTTAGATCCA
AATTCTGCCTACTATGATCCAAAAACTAGAGCAATGAGAGAGAATCCTTATGCCAATGCAGGAAAGAATC
CAGATGAAGTGAGTTATGCTGGAGATAACTTTGTTAGGTACACAGGAGATACCATTTCAATGGCTCAGAC
ACAGTTGTTTGCATGGGAAGCCTATGACAAGGGATCTGAAGTGCATCTACAGGCAGATCCTACAAAGCTA
GAGCTGTTGTATAAGTCCTTCAAAGTCAAAAAAGAAGATTTCAAAGAACAGCAGAAAGAAAGCATCCTGG
AAAAGTATGGTGGCCAAGAACATTTGGATGCCCCTCCAGCTGAATTGCTTTTAGCCCAGACTGAAGACTA
TGTGGAGTACTCAAGACATGGGACAGTCATCAAAGGACAGGAGCGGGCTGTTGCCTGCTCTAAGTATGAG
GAGGATGTGAAGATCCACAATCACACACATATCTGGGGATCGTACTGGAAAGAAGGCCGATGGGGATACA
AATGCTGTCACTCTTTTTTCAAGTATTCCTATTGTACTGGAGAAGCTGGGAAGGAGATTGTTAACTCTGA
GGAGTGTATTATAAATGAGATAACTGGGGAAGAATCTGTGAAAAAACCTCAAACCCTCATGGAGCTGCAT
CAAGAAAAACTGAAAGAGGAAAAGAAGAAGAAGAAAAAGAAAAAGAAGAAGCATCGAAAGAGCAGTTCAG
ATAGTGATGATGAAGAAAAGAAGCATGAAAAATTGAAAAAGGCACTGAACGCAGAGGAGGCCCGCCTTCT
TCATGTCAAGGAGACCATGCAGATTGATGAGAGGAAGCGGCCTTACAATAGCATGTATGAAACTCGAGAA
CCTACTGAAGAGGAAATGGAGGCATATAGAATGAAACGTCAGAGGCCAGATGACCCCATGGCCTCTTTCC
TTGGACAGTAG

Translation (586 aa):
MSATVVDAVNAAPLSGSKEMSLEEPKKMTREDWRKKKELEEQRKLGNAPAEVDEEGKDINPHIPQYISSV
PWYIDPSKRPTLKHQRPQPEKQKQFSSSGEWYKRGVKENSIITKYRKGACENCGAMTHKKKDCFERPRRV
GAKFTGTNIAPDEHVQPQLMFDYDGKRDRWNGYNPEEHMKIVEEYAKVDLAKRTLKAQKLQEELASGKLV
EQANSPKHQWGEEEPNSQMEKDHNSEDEDEDKYADDIDMPGQNFDSKRRITVRNLRIREDIAKYLRNLDP
NSAYYDPKTRAMRENPYANAGKNPDEVSYAGDNFVRYTGDTISMAQTQLFAWEAYDKGSEVHLQADPTKL
ELLYKSFKVKKEDFKEQQKESILEKYGGQEHLDAPPAELLLAQTEDYVEYSRHGTVIKGQERAVACSKYE
EDVKIHNHTHIWGSYWKEGRWGYKCCHSFFKYSYCTGEAGKEIVNSEECIINEITGEESVKKPQTLMELH
QEKLKEEKKKKKKKKKKHRKSSSDSDDEEKKHEKLKKALNAEEARLLHVKETMQIDERKRPYNSMYETRE
PTEEEMEAYRMKRQRPDDPMASFLGQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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