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Report for CCDS55067.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55067.1 Public Homo sapiens 6 IYD 24 110 108 CCDS HistoryNCBI Gene:389434Re-query CCDS DB by CCDS ID:55067.1Re-query CCDS DB by GeneID:389434See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55067.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000229447.9 ENSP00000229447.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000229447.9Link to Ensembl Protein Viewer:ENSP00000229447.5Re-query CCDS DB by Nucleotide ID:ENST00000229447Re-query CCDS DB by Protein ID:ENSP00000229447
Original member Current member NCBI NM_001164694.2 NP_001158166.1 Accepted alive Link to Nucleotide Sequence:NM_001164694.2Link to Protein Sequence:NP_001158166.1Re-query CCDS DB by Nucleotide ID:NM_001164694Re-query CCDS DB by Protein ID:NP_001158166Link to BLAST:NP_001158166.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001158166.1 293 Q6PHW0-4 293 100% 0 0

Chromosomal Locations for CCDS 55067.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 150369032 150369209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 150389352 150389543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 150392345 150392504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 150394099 150394255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 150395455 150395566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 150398055 150398137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (882 nt):
ATGTATTTCCTGACTCCCATCTTGGTAGCCATTCTCTGCATTTTGGTTGTGTGGATCTTTAAAAATGCCG
ACAGAAGCATGGAGAAAAAGAAGGGGGAGCCTAGAACCAGGGCCGAAGCTCGCCCCTGGGTGGATGAAGA
CTTAAAAGACAGCAGTGACCTGCACCAAGCAGAAGAAGATGCTGATGAATGGCAAGAATCAGAAGAAAAT
GTTGAACACATCCCCTTCTCTCATAACCACTATCCTGAGAAGGAAATGGTTAAGAGGTCTCAGGAATTTT
ATGAACTTCTCAATAAGAGACGGTCAGTCAGGTTCATAAGTAATGAGCAAGTCCCAATGGAAGTCATTGA
TAATGTCATCAGAACGGCAGGAACAGCCCCGAGTGGGGCTCACACAGAGCCCTGGACCTTCGTGGTTGTG
AAGGACCCAGACGTGAAGCACAAGATTCGAAAGATCATTGAGGAGGAAGAGGAGATCAACTACATGAAAA
GGATGGGACATCGCTGGGTCACAGACCTCAAGAAACTGAGAACCAACTGGATTAAAGAGTACTTGGATAC
TGCCCCTATTTTGATTCTCATTTTCAAACAAGTACATGGTTTCGCCGCAAATGGCAAGAAAAAAGTCCAC
TACTACAATGAGATCAGTGTTTCCATCGCTTGTGGCATCCTGCTAGCTGCCCTGCAGGTAAATAATGGAA
TCACCATGCGGCATCAGACTGCGAGGCACCGCCACCTGATTGAGGGTCCTGGAAGAAGCAGCGAAGCCTG
CAGCAAGCTCAGCTCACAAGGCTGCCCAGAATGCAGGTCTGGTGACTGTCACTACCACTCCTCTCAACTG
TGGCCCTCGACTGAGGGTGCTCCTGGGCCGCCCCGCACATGA

Translation (293 aa):
MYFLTPILVAILCILVVWIFKNADRSMEKKKGEPRTRAEARPWVDEDLKDSSDLHQAEEDADEWQESEEN
VEHIPFSHNHYPEKEMVKRSQEFYELLNKRRSVRFISNEQVPMEVIDNVIRTAGTAPSGAHTEPWTFVVV
KDPDVKHKIRKIIEEEEEINYMKRMGHRWVTDLKKLRTNWIKEYLDTAPILILIFKQVHGFAANGKKKVH
YYNEISVSIACGILLAALQVNNGITMRHQTARHRHLIEGPGRSSEACSKLSSQGCPECRSGDCHYHSSQL
WPSTEGAPGPPRT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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