NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS52619.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52619.1 Public Mus musculus 8 Trmt1 23 108 98 CCDS HistoryNCBI Gene:212528Re-query CCDS DB by CCDS ID:52619.1Re-query CCDS DB by GeneID:212528See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52619.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109768.8 ENSMUSP00000105390.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109768.8Link to Ensembl Protein Viewer:ENSMUSP00000105390.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109768Re-query CCDS DB by Protein ID:ENSMUSP00000105390
Original member Current member NCBI NM_001164560.1 NP_001158032.1 Accepted alive Link to Nucleotide Sequence:NM_001164560.1Link to Protein Sequence:NP_001158032.1Re-query CCDS DB by Nucleotide ID:NM_001164560Re-query CCDS DB by Protein ID:NP_001158032Link to BLAST:NP_001158032.1

Chromosomal Locations for CCDS 52619.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 84689315 84689349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84689708 84689908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84690517 84690572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84690811 84690947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84691252 84691439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84695222 84695337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84695428 84695540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84696827 84696975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84697115 84697201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84697269 84697338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84697425 84697559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84697646 84697731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84698185 84698293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84698393 84698469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84699139 84699258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84699341 84699470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84699603 84699764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1971 nt):
ATGCGAGAAGCATGCACCGTGACTCGTTGGATCCTCCTCTGTAGAGCTCAGTTCATGGAACGGAAGGCCC
AGAAGCCTCCCTCTCCACCAGCGATGGAGAACGGCACCCGGTCCTGGGAAGAGCGCCCACCCGCGGACCC
GGTTGCGACTGTCACTGAGGGCGCCGCCAAAATCGTCTTTCCCAGTGCTAACGAGGTTTTCTATAACCCG
GTGCAGGAATTCAACCGGGACCTGACGTGTGCTGTGATCACAGAGTTTGCTCGAATTCATCTTGGGGCCA
AGGGAATCCAGATCAAGGTTCCAGGAGAGAAGGACTCAGAGAAAATAGCTGTGGACTTGTCTGATCAAGA
AGAGGAAACAGCTGGAAAGAATGAAAATCTGGCCCCAGGGGACTGGCCACGGACTGCTGCAGTGGGTGAG
ATCTGTGAGGAAGGTCTACGAGTGCTGGAAGGCCTGGCAGCTTCCGGTCTGCGCTCCATCCGTTTTGCCC
TGGAGGTTCCTGGCCTCCAGTCTGTGGTTGCCAATGATGCCTCTGCCCGGGCTGTAGAGCTTATGCACAG
AAATGTGGAGCTCAATGGTGTGGCACATCTTGTTCAGCCCAACCAGGCAGATGCCCGGATGCTGATGTAC
CAACACCAAAAGGCACCTGAGCGATTTGATGTCATTGACCTGGACCCCTATGGCAGCCCCGCCCCCTTCC
TGGATGCAGCAGTGCAGGCTGTGAGTGATGGAGGACTTCTGTGTGTCACCTGCACAGACATGGCAGTCCT
GGCGGGGAACAGCGGAGAGACATGCTACAGCAAGTATGGGGCCATGGCCCTCAAGAGCCGAGCCTGCCAT
GAAATGGCCCTGCGGATTGTGCTGCACAGCCTGGACCTGCACGCCAACTGCTACCAGCGCTATATCGTGC
CGCTGCTCAGCATCAGTGCTGACTTCTATATCCGGGTCTTTGTACGTGTTTTCACAGGCCAGGCCAAGGT
TAAGTCCTCAGCCAGCAAACAGGCCCTGGTGTTCCAGTGTGTGGGTTGTGGAGCCTTCTACCTGCAACGC
CTTGGCAAAGCATCAGGAGACCCTGGTGGCAGGATCAAGTTCTCTGCAGCCTGTGGTCCTCCAGTAACTC
CCGAGTGTGAGCACTGTGGACAGAGACACCAGCTTGGGGGCCCCATGTGGGCAGAGCCCATCCATGACCT
GGACTTTGTGGGCCGAGTTCTTGACGCAGTGACCACGAATCCTGGCCGCTTCCACACTTCCATGAGGATC
CAAGGCGTCCTCAGTGTTGTTACTGAGGAACTTCCTGATGTCCCTCTCTACTACACACTGGACCAACTGA
GCAGCACTATCCACTGCAACACACCCCGCCTTCTGCAGCTTCGGTCAGCTCTCCTTCATGCTGGTTTCCG
AGTCTCTCTCTCCCATGCTTGTAAGAATGCAGTGAAGACAGATGCTCCCCCTGAGGCCCTCTGGGACATC
ATGCGTTGCTGGGAAAAGGAATGTCCAGTGAAACGGGAGCGGCTGTCTGAAAGCAGTCCAGCATTCCGAA
TTCTTGCTGTGGAGCCCAGGCTGAAGGCCAACTTCAACATCCGGGAAGACGCCAACCCCAGCTCCCGCCA
GCGAGGACTTAAGCGCTTCCAGGCCAATCCAGAAGCCAACTGGGGTCCCCGGCCCCGTGCCCGGCCAGGG
GGCAAGGCAGCAAGTGAAGATCTAGCAGGGAGGCGGAGGCTGCTACAGAATAAGAGGAAGGAGCCAGCTG
AGGACCCGGCCCAGCGTGCAGCTCGCCTTAAGACATTTCCTTGCAAACGATTCAAAGAGGGTACCTGTCA
ACTAGGGGACCAGTGCTGTTATTCACACAGTCCTGCAGCTCCTGTGGCCTCTGGTGATATCCCCATCGAA
GAATGTCCAGAGACTACCACCAAGATCTCCCCTGGACCAAAGGCTGCTGCTGGGGGTATTCCTGGGCCAG
GTGTAGACTGA

Translation (656 aa):
MREACTVTRWILLCRAQFMERKAQKPPSPPAMENGTRSWEERPPADPVATVTEGAAKIVFPSANEVFYNP
VQEFNRDLTCAVITEFARIHLGAKGIQIKVPGEKDSEKIAVDLSDQEEETAGKNENLAPGDWPRTAAVGE
ICEEGLRVLEGLAASGLRSIRFALEVPGLQSVVANDASARAVELMHRNVELNGVAHLVQPNQADARMLMY
QHQKAPERFDVIDLDPYGSPAPFLDAAVQAVSDGGLLCVTCTDMAVLAGNSGETCYSKYGAMALKSRACH
EMALRIVLHSLDLHANCYQRYIVPLLSISADFYIRVFVRVFTGQAKVKSSASKQALVFQCVGCGAFYLQR
LGKASGDPGGRIKFSAACGPPVTPECEHCGQRHQLGGPMWAEPIHDLDFVGRVLDAVTTNPGRFHTSMRI
QGVLSVVTEELPDVPLYYTLDQLSSTIHCNTPRLLQLRSALLHAGFRVSLSHACKNAVKTDAPPEALWDI
MRCWEKECPVKRERLSESSPAFRILAVEPRLKANFNIREDANPSSRQRGLKRFQANPEANWGPRPRARPG
GKAASEDLAGRRRLLQNKRKEPAEDPAQRAARLKTFPCKRFKEGTCQLGDQCCYSHSPAAPVASGDIPIE
ECPETTTKISPGPKAAAGGIPGPGVD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH