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Report for CCDS25458.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25458.1 Public Mus musculus 11 Vps25 23 108 98 CCDS HistoryNCBI Gene:28084Re-query CCDS DB by CCDS ID:25458.1Re-query CCDS DB by GeneID:28084See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25458.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042477.12 ENSMUSP00000042088.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042477.12Link to Ensembl Protein Viewer:ENSMUSP00000042088.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000042477Re-query CCDS DB by Protein ID:ENSMUSP00000042088
Original member Current member NCBI NM_026776.5 NP_081052.2 Accepted alive Link to Nucleotide Sequence:NM_026776.5Link to Protein Sequence:NP_081052.2Re-query CCDS DB by Nucleotide ID:NM_026776Re-query CCDS DB by Protein ID:NP_081052Link to BLAST:NP_081052.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081052.2 176 Q9CQ80-1 176 100% 0 0

Chromosomal Locations for CCDS 25458.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 101253755 101253807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101254031 101254176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101254943 101254996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101256009 101256097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101256878 101256953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101258910 101259022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (531 nt):
ATGGCGATGAGTTTCGAGTGGCCGTGGCAGTACCGCTTCCCGCCCTTCTTTACGTTACAGCCGAACGTGG
ACACCCGGCAGAAGCAGCTGGCCGCCTGGTGCTCTCTGGTTCTGTCCTTCTGCCGCCTGCACAAACAGTC
CAGCATGACGGTGATGGAAGCCCAGGAGAGCCCGCTTTTCAACAACGTCAAGCTACAGCGGAAACTTCCT
GTGGAGTCAATTCAGATTGTATTAGAAGAACTGAGAAAGAAAGGGAACCTCGAGTGGTTGGATAAGAATA
AGTCTAGCTTCCTGATCATGTGGCGGAGGCCAGAAGAATGGGGGAAACTCATTTACCAATGGGTTTCCAG
GAGTGGCCAGAATAACTCTGTGTTTACTCTGTATGAACTGACGAGTGGGGAAGACACAGAGGATGAAGAG
TTCCATGGGCTGGACGAGGCGACCCTGCTGCGCGCTCTGCAGGCCCTACAGCAAGAGCACAAGGCTGAGA
TTATCACTGTCAGCGATGGCCGAGGAGTCAAGTTCTTCTAG

Translation (176 aa):
MAMSFEWPWQYRFPPFFTLQPNVDTRQKQLAAWCSLVLSFCRLHKQSSMTVMEAQESPLFNNVKLQRKLP
VESIQIVLEELRKKGNLEWLDKNKSSFLIMWRRPEEWGKLIYQWVSRSGQNNSVFTLYELTSGEDTEDEE
FHGLDEATLLRALQALQQEHKAEIITVSDGRGVKFF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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