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Report for CCDS21659.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21659.1 Public Mus musculus 7 Ilk 23 108 98 CCDS HistoryNCBI Gene:16202Re-query CCDS DB by CCDS ID:21659.1Re-query CCDS DB by GeneID:16202See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21659.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033182.9 ENSMUSP00000033182.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033182.9Link to Ensembl Protein Viewer:ENSMUSP00000033182.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000033182Re-query CCDS DB by Protein ID:ENSMUSP00000033182
Original member Current member EBI ENSMUST00000163389.8 ENSMUSP00000130341.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163389.8Link to Ensembl Protein Viewer:ENSMUSP00000130341.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163389Re-query CCDS DB by Protein ID:ENSMUSP00000130341
Original member Current member NCBI NM_001161724.1 NP_001155196.1 Accepted alive Link to Nucleotide Sequence:NM_001161724.1Link to Protein Sequence:NP_001155196.1Re-query CCDS DB by Nucleotide ID:NM_001161724Re-query CCDS DB by Protein ID:NP_001155196Link to BLAST:NP_001155196.1
Original member Current member NCBI NM_010562.2 NP_034692.2 Accepted alive Link to Nucleotide Sequence:NM_010562.2Link to Protein Sequence:NP_034692.2Re-query CCDS DB by Nucleotide ID:NM_010562Re-query CCDS DB by Protein ID:NP_034692Link to BLAST:NP_034692.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001155196.1 452 O55222 452 100% 0 0
NP_034692.2 452 O55222 452 100% 0 0

Chromosomal Locations for CCDS 21659.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 105737149 105737237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105740177 105740342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105740513 105740608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105740771 105740867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105740960 105741043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105741148 105741233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105741374 105741483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105741580 105741707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105741787 105741908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105741997 105742096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105742207 105742337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105742513 105742662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1359 nt):
ATGGACGACATTTTCACTCAGTGCCGGGAGGGCAACGCGGTGGCGGTGCGCTTGTGGCTGGACAACACAG
AGAACGACCTCAATCAGGGGGATGATCATGGCTTCTCCCCCTTGCACTGGGCCTGCCGAGAAGGCCGCTC
TGCGGTGGTTGAAATGCTGATCATGCGTGGAGCACGGATTAATGTGATGAATCGTGGGGATGATACCCCC
CTGCACCTGGCAGCTAGTCATGGACACCGTGACATTGTACAGAAGCTGTTGCAATACAAGGCTGACATCA
ATGCAGTGAATGAGCACGGCAATGTGCCACTTCACTATGCATGTTTCTGGGGCCAAGACCAGGTGGCAGA
GGACCTGGTGGCTAACGGGGCTCTTGTGAGCATCTGTAACAAGTATGGAGAGATGCCTGTGGACAAAGCC
AAGGCACCCCTTAGAGAGCTTCTCCGAGAACGGGCAGAGAAAATGGGCCAGAATCTCAACCGTATTCCAT
ACAAGGACACATTCTGGAAGGGGACCACTCGCACAAGGCCCCGAAATGGGACCCTGAACAAACACTCCGG
TATTGACTTCAAACAGCTCAACTTTCTGGCAAAGCTCAATGAGAATCATTCTGGAGAGCTTTGGAAAGGC
CGCTGGCAGGGCAATGATATTGTTGTGAAGGTGCTGAAGGTTCGAGACTGGAGTACAAGGAAAAGCAGGG
ACTTCAATGAGGAATGTCCCCGGCTCAGGATTTTCTCACACCCTAACGTGCTCCCAGTGCTAGGTGCTTG
CCAGGCTCCCCCAGCCCCCCACCCAACCCTCATCACACACTGGATGCCATATGGATCTCTCTACAATGTT
CTACATGAAGGCACCAATTTCGTTGTGGACCAGAGCCAAGCTGTAAAGTTTGCTTTGGACATGGCAAGAG
GCATGGCTTTTCTTCACACACTAGAGCCTCTCATACCCCGGCATGCACTCAATAGCCGCAGTGTAATGAT
CGATGAAGATATGACTGCCCGAATCAGCATGGCTGATGTTAAGTTTTCTTTCCAGTGCCCTGGGCGCATG
TATGCGCCTGCCTGGGTGGCCCCTGAAGCCCTGCAGAAGAAGCCTGAAGACACAAACAGACGCTCAGCAG
ACATGTGGAGTTTCGCGGTGCTTCTGTGGGAACTGGTGACACGAGAGGTGCCCTTTGCTGACCTCTCTAA
TATGGAGATTGGGATGAAGGTGGCACTGGAAGGCCTTCGGCCTACCATCCCACCAGGTATTTCCCCCCAT
GTGTGTAAGCTCATGAAGATTTGCATGAATGAAGACCCTGCAAAGCGACCCAAGTTTGACATGATTGTGC
CTATCTTGGAGAAGATGCAGGACAAGTAG

Translation (452 aa):
MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTP
LHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKA
KAPLRELLRERAEKMGQNLNRIPYKDTFWKGTTRTRPRNGTLNKHSGIDFKQLNFLAKLNENHSGELWKG
RWQGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQAPPAPHPTLITHWMPYGSLYNV
LHEGTNFVVDQSQAVKFALDMARGMAFLHTLEPLIPRHALNSRSVMIDEDMTARISMADVKFSFQCPGRM
YAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSNMEIGMKVALEGLRPTIPPGISPH
VCKLMKICMNEDPAKRPKFDMIVPILEKMQDK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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