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Report for CCDS25068.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25068.2 Public Mus musculus 11 Bhlha9 23 108 98 CCDS HistoryNCBI Gene:320522Re-query CCDS DB by CCDS ID:25068.2Re-query CCDS DB by GeneID:320522See the combined annotation on chromosome 11 in Sequence Viewer

Public Note for CCDS 25068.2
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 25068.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056184.1 ENSMUSP00000050516.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056184.1Link to Ensembl Protein Viewer:ENSMUSP00000050516.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000056184Re-query CCDS DB by Protein ID:ENSMUSP00000050516
Original member Current member NCBI NM_177182.4 NP_796156.3 Accepted alive Link to Nucleotide Sequence:NM_177182.4Link to Protein Sequence:NP_796156.3Re-query CCDS DB by Nucleotide ID:NM_177182Re-query CCDS DB by Protein ID:NP_796156Link to BLAST:NP_796156.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796156.3 231 Q5RJB0 231 100% 0 0

Chromosomal Locations for CCDS 25068.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 76672549 76673244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (696 nt):
ATGCTCCGAGGCACGCCAGGACTAGGCCTCGGGGGCCTGAACCGGGCTGAGGATTTTGTGGAGGACTTGG
GGCGCTCCTGCTCGGAGGCTGGCAGGAATTTTGGAGTGCTGAGGAGGAGCAGCTTGGACGAGGCAGAAGA
GGCAGCTGGCAGAAAGCGCGAGCGGCCCACACGGTCCAAGGCTCGGCGCATGGCGGCTAACGTGCGGGAG
CGCAAGCGCATCCTGGATTACAACGAGGCGTTCAACGCGCTCCGCCGGGCGCTGCAGCATGACCTCGGAG
GCAAGAGGCTCTCCAAGATCGCTACGCTGCGCAGGGCCATCCACCGCATCACTGCTCTATCCTTGGTCCT
GCGTGCCAGTCCGGCGCCCCGCTGGCCCTGCGGACACCTGGAGTGTCACGGCCAGGCTGCCCAAGGCTCG
AGCACGGGGAATTCCAGCTTCAGTGTTCCGCGGTCAGCGCCGTCTCCTATAGCGCCTAGCCTAACGCGCA
GGGACATCGCCAGCCCCTTAGTGCCGCCTACACCGCGCTGCGCTTCGTGTTCCCCGCACTCGCACTTGGG
GCGGCCTAGGGTGATGGCCGAAGTGCCCAATTTGGCCCAAACCTCCGGGGGAAACTGGCGTCAATGTCCT
GGGGCTCCCCCTGTTCGACCGGTTTCGTGGCGGTGGGGTTCTGGGCTGGGCTACCAGCACTCTTGA

Translation (231 aa):
MLRGTPGLGLGGLNRAEDFVEDLGRSCSEAGRNFGVLRRSSLDEAEEAAGRKRERPTRSKARRMAANVRE
RKRILDYNEAFNALRRALQHDLGGKRLSKIATLRRAIHRITALSLVLRASPAPRWPCGHLECHGQAAQGS
STGNSSFSVPRSAPSPIAPSLTRRDIASPLVPPTPRCASCSPHSHLGRPRVMAEVPNLAQTSGGNWRQCP
GAPPVRPVSWRWGSGLGYQHS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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