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Report for CCDS21220.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21220.1 Public Mus musculus 7 Med25 23 108 98 CCDS HistoryNCBI Gene:75613Re-query CCDS DB by CCDS ID:21220.1Re-query CCDS DB by GeneID:75613See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21220.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000003049.7 ENSMUSP00000003049.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000003049.7Link to Ensembl Protein Viewer:ENSMUSP00000003049.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000003049Re-query CCDS DB by Protein ID:ENSMUSP00000003049
Original member NCBI NM_029365.3 NP_083641.1 Updated not alive Link to Nucleotide Sequence:NM_029365.3Link to Protein Sequence:NP_083641.1Re-query CCDS DB by Nucleotide ID:NM_029365Re-query CCDS DB by Protein ID:NP_083641
Current member NCBI NM_029365.4 NP_083641.1 Accepted alive Link to Nucleotide Sequence:NM_029365.4Link to Protein Sequence:NP_083641.1Re-query CCDS DB by Nucleotide ID:NM_029365Re-query CCDS DB by Protein ID:NP_083641Link to BLAST:NP_083641.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083641.1 745 Q8VCB2-1 745 100% 0 0

Chromosomal Locations for CCDS 21220.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 44879417 44879514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44879927 44880104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44880252 44880470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44880567 44880638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44880923 44881111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44882759 44882866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44882968 44883025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44883099 44883184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44884119 44884247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44884563 44884756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44884833 44884920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44885080 44885210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44885339 44885501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44885784 44885904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44886172 44886270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44891783 44891907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44892099 44892144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44892231 44892364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2238 nt):
ATGGTCCCCGGATCCGAAGGCCCGGCGCGGGCCGGGGGCCTGGTCGCCGATGTGGTGTTTGTGATCGAGG
GGACAGCAAACCTGGGGCCGTACTTCGAGGAGCTCCGCAAGCACTACCTGCTGCCTGCCATAGAGTACTT
CAACGGGGGACCCCCTGCAGAGACGGACTTTGGGGGAGACTATGGTGGAACCCAGTACAGCCTTGTGGTG
TTCAACACCGTGGACTGCGCTCCAGAGTCCTATGTACAATGTCACGCACCTACCAGCAGTGCCTATGAGT
TTGTCACCTGGCTCGATGGCATCAAGTTCATGGGCGGTGGTGGCGAGAGCTGTAGTCTCATCGCTGAAGG
TCTGAGCACTGCCCTGCAGCTGTTCGATGACTTTAAGAAGATGCGTGAACAGATTGGCCAGACCCACCGA
GTCTGTCTCCTCATCTGCAACTCACCCCCGTACCTCCTGCCCGCCGTGGAGAGCACCACCTACTCAGGCT
GCACTACCGAGAGCCTGGTGCAGAAAATAGGAGAGCGAGGCATCCACTTCTCCATCGTTTCTCCGAGAAA
GCTGCCAGCCCTCCGGCTTCTGTTTGAGAAGGCGGCTCCTCCTGCCCTACTGGAGCCTTTGCAGCAACCA
GCAGACGTCAGCCAGGACCCCAGGCACATGGTGCTTGTGCGTGGGCTCGTGCTGCCTGTTGGTGGCAGCT
CGACCTCAGGCTCTCTGCAGACCAAGCAAGCAGTCCCCTTGCCACCAGCTCCAGCTTCTGCTGCCACGCT
GTCAGCAGCGCCCCCGCAGGCTCTGCCCCCTGTCCCACCACAGTACCAGGTTCCTGGGAACCTAAGTGCT
GCTCAGGTGGCTGCGCAGAATGCTGTGGAGGCTGCCAAGAGCCAGAAGGCCGGGCTGGGCCCACGCTTCT
CACCCATCAACCCTCTCCAGCAAGCTGCTCCAGGAGTGGGGCCCCCCTTCAGCCAGGCCCCAGCACCCCC
ATTGGCTCCTGTGCCCCCTGGAGCTCCAAAGCCACCTCCTGCCTCACAGCCTAGCCTAGTCTCCACCGTG
GCCCCCGGACCAGTCCTGGCAGCTCCTGCGCAGCCTGGGGCGCCGTCTCTGGCAGGCACTGTAACCCCAG
GTGGGGTCAATGGTCCTTCAGCAGCCCAGCTTGGGGGTCCTGCACTTGGTGGGCAGCAGTCAGTATCCAA
CAAGCTCCTAGCCTGGAGTGGAGTCCTCGAGTGGCAGGAGAAACCCAAGCCTGCATCTGTGGATGCCAAC
ACCAAGCTGACGAGGTCTCTGCCTTGCCAGGTCTATGTGAACCATGGAGAAAACCTGAAGACTGAGCAGT
GGCCCCAGAAACTGATCATGCAGCTTATCCCTCAGCAGCTGCTGACCACCCTGGGTCCGCTGTTCCGGAA
CTCAAGAATGGTTCAGTTCCACTTCACCAACAAGGACCTGGAGTCCCTCAAAGGCCTCTACCGCATCATG
GGCAATGGCTTTGCGGGCTGCGTGCATTTCCCGCACACGGCCCCATGCGAGGTGCGCGTGCTTATGCTCC
TGTACTCGTCTAAGAAGAAGATCTTCATGGGCCTCATCCCCTACGACCAGAGCGGCTTCGTCAATGGCAT
CCGCCAGGTCATCACCAACCACAAGCAGGTCCAGCAGCAGAAGCTGGAGCAACAGCGCGGGATGGGGGCA
CAGCAGGCACCTCCAGTCCTGGGCCCCATTCTGGAGGAGCAAGCGAGGCCCCCGCAGAATCTACTACAGC
TCCGTGCACCACAGCCTCAGCCTCAGGGTGCCGTGGGAGCTTCTGCGGCTACAGGGCAGCCCCAGCCCCA
AGGTGCTACCCAGGCCCCCACAGGCGCACCTCAAGGTCCTCCTGGAGCAGCCCCTGGCCCACCTCCTTCT
GGACCCATCCTGCGGCCCCAGAACCCTGGGGCCAACCCCCAGCTGCGGAGCCTTCTCCTTAACCCAGCAC
CGCCCCAGACTGGGGTGCCCCCGCCCCAGGCCTCCCTACACCACCTACAGCCTCCAGGGGCCCCTACATT
GCTGCCACCACATCAGAGCATGGGGCAGCCCCAGCTGGGGCCGCAGCTCCTGCATCCTCCACCTGCCCAG
TCATGGCCCACACAGCTTCCCCAGCGGGCGCCACTGCCAGGTCAGATGCTGCTGAGCGGGGGTCCCAGGG
GCCCGGTCCCCCAGCCGGGCCTGCAGCCCAGCGTCATGGAGGACGACATCCTCATGGACCTCATCTGA

Translation (745 aa):
MVPGSEGPARAGGLVADVVFVIEGTANLGPYFEELRKHYLLPAIEYFNGGPPAETDFGGDYGGTQYSLVV
FNTVDCAPESYVQCHAPTSSAYEFVTWLDGIKFMGGGGESCSLIAEGLSTALQLFDDFKKMREQIGQTHR
VCLLICNSPPYLLPAVESTTYSGCTTESLVQKIGERGIHFSIVSPRKLPALRLLFEKAAPPALLEPLQQP
ADVSQDPRHMVLVRGLVLPVGGSSTSGSLQTKQAVPLPPAPASAATLSAAPPQALPPVPPQYQVPGNLSA
AQVAAQNAVEAAKSQKAGLGPRFSPINPLQQAAPGVGPPFSQAPAPPLAPVPPGAPKPPPASQPSLVSTV
APGPVLAAPAQPGAPSLAGTVTPGGVNGPSAAQLGGPALGGQQSVSNKLLAWSGVLEWQEKPKPASVDAN
TKLTRSLPCQVYVNHGENLKTEQWPQKLIMQLIPQQLLTTLGPLFRNSRMVQFHFTNKDLESLKGLYRIM
GNGFAGCVHFPHTAPCEVRVLMLLYSSKKKIFMGLIPYDQSGFVNGIRQVITNHKQVQQQKLEQQRGMGA
QQAPPVLGPILEEQARPPQNLLQLRAPQPQPQGAVGASAATGQPQPQGATQAPTGAPQGPPGAAPGPPPS
GPILRPQNPGANPQLRSLLLNPAPPQTGVPPPQASLHHLQPPGAPTLLPPHQSMGQPQLGPQLLHPPPAQ
SWPTQLPQRAPLPGQMLLSGGPRGPVPQPGLQPSVMEDDILMDLI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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