CCDS Report for Consensus CDS

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Report for CCDS38919.2 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
38919.2	Public	Mus musculus	4	Srrm1	23	108	98

Public Note for CCDS 38919.1
The coding region has been updated to represent an alternate 3' splice pattern that is more supported by the available transcript and homology data.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 38919.2

Original	Current	Source	Nucleotide ID	Protein ID	Status in CCDS	Seq. Status	Links
		EBI	ENSMUST00000136342.8	ENSMUSP00000125003.1	Accepted	alive
		NCBI	NM_016799.4	NP_058079.2	Accepted	alive

Chromosomal Locations for CCDS 38919.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)

Genome Browser links:

Chromosome	Start	Stop
4	135321347	135321454
4	135322290	135322499
4	135323914	135324109
4	135324819	135325280
4	135327092	135327223
4	135329004	135329045
4	135329373	135329517
4	135331721	135331807
4	135332158	135332238
4	135337804	135338078
4	135340503	135340622
4	135340847	135341035
4	135342370	135342573
4	135343864	135343979
4	135344499	135344669
4	135346735	135346857
4	135347115	135347204
4	135353097	135353117

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2772 nt):
ATGGACGCGGGATTCTTCCGCGGAACAAGTGCGGAGCAGGATAATCGGTTCAGCAACAAACAGAAGAAAC TCCTCAAGCAGCTGAAATTTGCAGAATGCTTAGAAAAAAAGGTGGACATGAGCAAAGTAAATTTGGAGGT TATAAAGCCTTGGATAACCAAAAGAGTAACTGAGATCCTTGGATTCGAAGATGATGTTGTCATTGAGTTT ATATTCAACCAGCTGGAAGTGAAGAACCCAGATTCCAAAATGATGCAAATCAACCTGACTGGGTTTTTGA ATGGGAAGAATGCTAGAGAATTCATGGGAGAGCTGTGGCCCCTGCTGTTGAGTGCACAAGAAAATATCGC CGGAATCCCTTCTGCTTTCCTAGAGTTGAAGAAGGAAGAGATAAAGCAGAGACAAATTGAACAAGAAAAA TTGGCGTCTCTGAAAAAACAAGATGAAGATAAAGATAAGAGGGATAAGGAAGAAAAGGAAAGCAGCAGAG AGAAGAGGGAGCGGTCTCGCAGCCCAAGAAGACGCAAATCCAGATCTCCTTCCCCTAGAAGACGATCTTC CCCTGTCAGGAGAGAGAGAAAGCGCAGTCACTCTCGATCTCCCCGTCACAGAACCAAGAGCCGGAGCCCT TCCCCTGCCCCAGAAAAGAAGGAGAAATCTCCAGAGCTCCCAGAGCCATCCGTGAGGATGAAGGACTCCT CAGTACAGGAGGCCACCTCTACAAGTGACATCTTGAAAGCTCCCAAGCCTGAGCCTGTACCAGAGCCCAA AGAACCGTCTCCAGAAAAAAATTCCAAAAAGGAAAAGGAAAAGACTCGACCAAGATCTCGGTCACGATCC AAATCTCGGTCTCGGACCCGATCTCGATCACCTTCTCATACTAGACCAAGACGGAGACATAGATCCCGAT CAAGATCATACTCTCCTAGAAGGCGGCCAAGCCCAAGACGACGACCATCTCCCCGAAGAAGAACTCCACC AAGACGGATGCCTCCTCCACCAAGGCACCGGAGGAGTAGGTCTCCAGGGAGACGAAGGAGGCGTTCTTCC GCATCCCTGTCTGGAAGTAGCTCGTCGTCCTCTTCATCTCGTTCCCGGTCACCACCAAAGAAACCTCCCA AGAGGACATCCAGCCCTCCTCGGAAAACGCGTAGGTTATCACCTTCAGCAAGTCCTCCACGGCGAAGACA CCGGCCGTCATCTCCAGCAACTCCGCCACCCAAAACTCGCCATTCCCCAACTCCCCAGCAGTCAAACCGT ACAAGAAAAAGTCGTGTTTCTGTGTCTCCAGGAAGAACCTCCGGTAAAGTGACAAAACATAAAGGTACTG AGAAAAGAGAGTCACCTTCTCCAGCACCCAAGCCTAGAAAAGTGGAGCTGTCTGAGTCTGAAGAAGACAA AGGCAGCAAAATGGCTGCAGCTGATTCTGTGCAGCAGAGAAGACAATACCGACGGCAGAACCAGCAGTCT TCATCTGACTCTGGCTCCTCTTCCACCTCAGAAGATGAGCGGCCCAAGAGATCCCATGTAAAGAACGGTG AGGTAGGCAGGCGGCGGAGACATTCCCCTTCTCGGAGTGCCTCTCCATCACCTCGAAAGCGCCAGAAAGA GACTTCCCCTCGGATGCAGATGGGAAAGCGATGGCAGTCACCAGTGACTAAAAGTAGTAGAAGGAGGAGA AGTCCCTCTCCCCCTCCTGCCAGAAGGCGAAGGTCTCCTTCTCCAGCCCCTCCGCCGCCACCTCCCCCTC CTCCTCCTCGGCGGCGCAGATCTCCCACCCCACCACCACGACGAAGGACCCCTTCTCCTCCCCCACGCCG CCGCTCACCGTCTCCAAGAAGATACTCTCCTCCCATTCAGAGGAGATACTCTCCTTCCCCCCCTCCAAAG AGGAGAACCGCCTCCCCCCCGCCCCCGCCCAAGCGAAGGGCATCACCATCTCCACCACCAAAGCGCCGGG TCTCCCACTCTCCACCTCCTAAACAAAGAAGCCCCACAGTCACCAAGAGACGCTCGCCCTCCTTATCTTC AAAACATAGGAAAGGGTCTTCCCCAGGCCGATCCACCCGGGAGGCCCGCTCACCACAACCAAACAAACGG CATTCGCCCTCACCACGGCCTCGGGCTCCTCAGACCTCAAGCCCTCCCCCTGTACGAAGAGGAGCTTCAG CGTCACCCCAAGGAAGGCAGTCCCCATCTCCAAGTACTAGGCCTATTAGGAGAGTCTCCAGGACCCCGGA GCCCAAAAAGATAAAAAAGGCTGCCTCACCAAGCCCTCAGTCCGTAAGAAGGGTTTCATCTTCCAGATCT GTCTCTGGATCTCCTGAGCCAGCAGCTAAAAAGCCGCCAGCACCTCCCTCTCCTGTGCAGTCTCAGTCAC CCTCCACAAACTGGTCACCTGCAGTACCAGCCAAAAAGGCTAAGAGCCCAACACCAAGCCTGTCCCCTGC CCGGAATTCTGATCAAGAAGGAGGTGGGAAGAAAAAGAAGAAGAAGAAGGACAAGAAACACAAGAAGGAT AAGAAACACAAGAAGCACAAAAAACACAAGAAGGAGAAGGCTGTGACCATAGCCACCCCAGCTACTGCAG CCCCTGCAGCTGTTTCTGCTGCCACCACCACATCAGCACAGGAAGAGCCTGCAGCAGCACCAGAGCCCAG GAAGGAGACTGAGAGTGAAGCTGAAGATGACAACCTTGATGACCTAGAGAGGCACCTGCGGGAGAAGGCC CTGCGGTCCATGCGGAAGGCTCAAGTGTCCCCACAGTCCTAA
Translation (923 aa):
MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEILGFEDDVVIEF IFNQLEVKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIAGIPSAFLELKKEEIKQRQIEQEK LASLKKQDEDKDKRDKEEKESSREKRERSRSPRRRKSRSPSPRRRSSPVRRERKRSHSRSPRHRTKSRSP SPAPEKKEKSPELPEPSVRMKDSSVQEATSTSDILKAPKPEPVPEPKEPSPEKNSKKEKEKTRPRSRSRS KSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPGRRRRRSS ASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSASPPRRRHRPSSPATPPPKTRHSPTPQQSNR TRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGSKMAAADSVQQRRQYRRQNQQS SSDSGSSSTSEDERPKRSHVKNGEVGRRRRHSPSRSASPSPRKRQKETSPRMQMGKRWQSPVTKSSRRRR SPSPPPARRRRSPSPAPPPPPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPK RRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPTVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKR HSPSPRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRS VSGSPEPAAKKPPAPPSPVQSQSPSTNWSPAVPAKKAKSPTPSLSPARNSDQEGGGKKKKKKKDKKHKKD KKHKKHKKHKKEKAVTIATPATAAPAAVSAATTTSAQEEPAAAPEPRKETESEAEDDNLDDLERHLREKA LRSMRKAQVSPQS

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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