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Report for CCDS24990.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24990.2 Public Mus musculus 11 Cyb5d2 23 108 98 CCDS HistoryNCBI Gene:192986Re-query CCDS DB by CCDS ID:24990.2Re-query CCDS DB by GeneID:192986See the combined annotation on chromosome 11 in Sequence Viewer

Public Note for CCDS 24990.1
The coding region has been updated to extend the N-terminus to one that is more supported by available conservation, transcript and protein data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 24990.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079681.5 ENSMUSP00000078623.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079681.5Link to Ensembl Protein Viewer:ENSMUSP00000078623.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000079681Re-query CCDS DB by Protein ID:ENSMUSP00000078623
Original member Current member NCBI NM_001024926.3 NP_001020097.2 Accepted alive Link to Nucleotide Sequence:NM_001024926.3Link to Protein Sequence:NP_001020097.2Re-query CCDS DB by Nucleotide ID:NM_001024926Re-query CCDS DB by Protein ID:NP_001020097Link to BLAST:NP_001020097.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001020097.2 263 Q5SSH8-1 263 100% 0 0

Chromosomal Locations for CCDS 24990.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 72778739 72778952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72782648 72782834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72789077 72789217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72795513 72795762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (792 nt):
ATGCTGAGGATATGCGGGCTTGGTGTGGTGCTGAGCCTGGCCGTGGCGGCGGTGGCTGTCATGGCCGTGT
GGTTGATGGACTGGTGGGGTCCCCGCCCTGGTATTCGCCTCTTCCTTCCCGAGGAGCTAGCCCGCTATCG
CGGCGGCCCAGGGGACCCGGGCCTGTACTTGGCACTGCTCGGCCGCGTCTACGACGTGTCCTCTGGCAGG
AGGCACTACGAGCCTGGGGCGCACTATAGCGGCTTCGCAGGCCGGGATGCATCCAGAGCATTTGTGACAG
GAGACTATTCTGAAGCCGGTCTTGTGGATGATATAAATGGCTTGTCCTCCTCTGAGATACTGACGCTGCA
CAACTGGCTTTCATTCTACGAGAAAAATTATGTATTTGTCGGAAGACTGGTTGGAAGGTTCTACAGAAAG
GATGGGTTACCCACTTCAGAACTAACCCAGGTAGAAGCCATGGTGACTAAAGGCATGGAGGCAAATGAAC
AGGAACAAAGAGAAAAGCAGAAGTTCCCACCATGCAATTCCGAGTGGAGCTCTGCTAAGGGCAGCAGGCT
CTGGTGCTCCCAAAAGAGTGGAGGTGTGCACAGAGACTGGATTGGTGTCCCCAGGAAGTTGTATAAGCCA
GGGGCCAAGGAGCCCCATTGTGTGTGTGTGAGAACAACTGGCCCTCCTAGTGACCAGCAAGACAACCCTA
GACACTCAAATCATGGGGACTTGGACAACCCCAACTTGGAAGAATACACAGGCTGCCCACCACTGGCTAC
CACATGTTCCTTCCCACTCTAA

Translation (263 aa):
MLRICGLGVVLSLAVAAVAVMAVWLMDWWGPRPGIRLFLPEELARYRGGPGDPGLYLALLGRVYDVSSGR
RHYEPGAHYSGFAGRDASRAFVTGDYSEAGLVDDINGLSSSEILTLHNWLSFYEKNYVFVGRLVGRFYRK
DGLPTSELTQVEAMVTKGMEANEQEQREKQKFPPCNSEWSSAKGSRLWCSQKSGGVHRDWIGVPRKLYKP
GAKEPHCVCVRTTGPPSDQQDNPRHSNHGDLDNPNLEEYTGCPPLATTCSFPL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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