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Report for CCDS28287.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28287.1 Public Mus musculus 16 Adamts1 23 108 98 CCDS HistoryNCBI Gene:11504Re-query CCDS DB by CCDS ID:28287.1Re-query CCDS DB by GeneID:11504See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28287.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023610.14 ENSMUSP00000023610.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023610.14Link to Ensembl Protein Viewer:ENSMUSP00000023610.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000023610Re-query CCDS DB by Protein ID:ENSMUSP00000023610
Original member Current member NCBI NM_009621.5 NP_033751.3 Accepted alive Link to Nucleotide Sequence:NM_009621.5Link to Protein Sequence:NP_033751.3Re-query CCDS DB by Nucleotide ID:NM_009621Re-query CCDS DB by Protein ID:NP_033751Link to BLAST:NP_033751.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033751.3 968 P97857 968 100% 0 0

Chromosomal Locations for CCDS 28287.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 85795401 85796100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 85796639 85796814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 85797718 85797893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 85798004 85798190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 85798410 85798696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 85799046 85799213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 85799536 85799668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 85800090 85800436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 85801978 85802710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2907 nt):
ATGCAGCCAAAAGTCCCTTTGGGGTCACGCAAGCAGAAGCCCTGCTCCGACATGGGGGACGTCCAGCGGG
CA
GCGAGATCTCGGGGCTCTCTGTCCGCACACATGCTGTTGCTGCTCCTCGCTTCCATAACAATGCTGCT
A
TGTGCGCGGGGCGCACACGGGCGCCCCACGGAGGAAGATGAGGAGCTGGTCCTGCCCTCGCTGGAGCGC
GCC
CCGGGCCACGATTCCACCACCACACGCCTTCGTCTGGACGCCTTTGGCCAGCAGCTACATCTGAAGT
TG
CAGCCGGACAGCGGTTTCTTGGCGCCTGGCTTCACCCTGCAGACTGTGGGGCGCAGTCCCGGGTCCGA
G
GCACAACATCTGGACCCCACCGGGGACCTGGCTCACTGCTTCTACTCTGGCACGGTGAACGGTGATCCC
GGC
TCTGCCGCAGCCCTCAGCCTCTGTGAAGGTGTGCGTGGTGCCTTCTACCTACAAGGAGAGGAGTTCT
TC
ATTCAGCCAGCGCCTGGAGTGGCCACCGAGCGCCTGGCCCCTGCCGTGCCCGAGGAGGAGTCATCCGC
A
CGGCCGCAGTTCCACATCCTGAGGCGAAGGCGGCGGGGCAGTGGCGGCGCCAAGTGCGGCGTCATGGAC
GAC
GAGACCCTGCCAACCAGCGACTCGCGACCCGAGAGCCAGAACACCCGGAACCAGTGGCCTGTGCGGG
AC
CCCACGCCTCAGGACGCGGGAAAGCCATCAGGACCAGGAAGCATAAGGAAGAAGCGATTTGTGTCCAG
C
CCCCGTTATGTGGAAACCATGCTCGTAGCTGACCAGTCCATGGCCGACTTCCACGGCAGCGGTCTAAAG
CAT
TACCTTCTAACCCTGTTCTCGGTGGCAGCCAGGTTTTACAAGCATCCCAGCATTAGGAATTCAATTA
GC
CTGGTGGTGGTGAAGATCTTGGTCATATACGAGGAGCAGAAGGGACCAGAAGTTACCTCCAATGCAGC
T
CTCACCCTTCGGAATTTCTGCAGCTGGCAGAAACAACACAACAGCCCCAGTGACCGGGATCCAGAGCAC
TAT
GACACTGCAATTCTGTTCACCAGACAGGATTTATGTGGCTCCCACACGTGTGACACTCTCGGAATGG
CA
GATGTTGGAACCGTATGTGACCCCAGCAGGAGCTGCTCAGTCATAGAAGATGATGGTTTGCAAGCCGC
C
TTCACCACAGCCCATGAATTGGGCCATGTGTTTAACATGCCGCACGATGATGCTAAGCACTGTGCCAGC
TTG
AATGGTGTGAGTGGCGATTCTCATCTGATGGCCTCGATGCTCTCCAGCTTAGACCATAGCCAGCCCT
GG
TCACCTTGCAGTGCCTACATGGTCACGTCCTTCCTAGATAATGGACACGGGGAATGTTTGATGGACAA
G
CCCCAGAATCCAATCAAGCTCCCTTCTGATCTTCCCGGTACCTTGTACGATGCCAACCGCCAGTGTCAG
TTT
ACATTCGGAGAGGAATCCAAGCACTGCCCTGATGCAGCCAGCACATGTACTACCCTGTGGTGCACTG
GC
ACCTCCGGTGGCTTACTGGTGTGCCAAACAAAACACTTCCCTTGGGCAGATGGCACCAGCTGTGGAGA
A
GGGAAGTGGTGTGTCAGTGGCAAGTGCGTGAACAAGACAGACATGAAGCATTTTGCTACTCCTGTTCAT
GGA
AGCTGGGGACCATGGGGACCGTGGGGAGACTGCTCAAGAACCTGTGGTGGTGGAGTTCAATACACAA
TG
AGAGAATGTGACAACCCAGTCCCAAAGAACGGAGGGAAGTACTGTGAAGGCAAACGAGTCCGCTACAG
G
TCCTGTAACATCGAGGACTGTCCAGACAATAACGGAAAAACGTTCAGAGAGGAGCAGTGCGAGGCGCAC
AAT
GAGTTTTCCAAAGCTTCCTTTGGGAATGAGCCCACTGTAGAGTGGACACCCAAGTACGCCGGCGTCT
CG
CCAAAGGACAGGTGCAAGCTCACCTGTGAAGCCAAAGGCATTGGCTACTTTTTCGTCTTACAGCCCAA
G
GTTGTAGATGGCACTCCCTGTAGTCCAGACTCTACCTCTGTCTGTGTGCAAGGGCAGTGTGTGAAAGCT
GGC
TGTGATCGCATCATAGACTCCAAAAAGAAGTTTGATAAGTGTGGCGTTTGTGGAGGAAACGGTTCCA
CA
TGCAAGAAGATGTCAGGAATAGTCACTAGTACAAGACCTGGGTATCATGACATTGTCACAATTCCTGC
T
GGAGCCACCAACATTGAAGTGAAACATCGGAATCAAAGGGGGTCCAGAAACAATGGCAGCTTTCTGGCT
ATT
AGAGCCGCTGATGGTACCTATATTCTGAATGGAAACTTCACTCTGTCCACACTAGAGCAAGACCTCA
CC
TACAAAGGTACTGTCTTAAGGTACAGTGGTTCCTCGGCTGCGCTGGAAAGAATCCGCAGCTTTAGTCC
A
CTCAAAGAACCCTTAACCATCCAGGTTCTTATGGTAGGCCATGCTCTCCGACCCAAAATTAAATTCACC
TAC
TTTATGAAGAAGAAGACAGAGTCATTCAACGCCATTCCCACATTTTCTGAGTGGGTGATTGAAGAGT
GG
GGGGAGTGCTCCAAGACATGCGGCTCAGGTTGGCAGAGAAGAGTAGTGCAGTGCAGAGACATTAACGG
A
CACCCTGCTTCCGAATGTGCAAAGGAAGTGAAGCCAGCCAGTACCAGACCTTGTGCAGACCTTCCTTGC
CCA
CACTGGCAGGTGGGGGATTGGTCACCATGTTCCAAAACTTGCGGGAAGGGTTACAAGAAGAGAACCT
TG
AAATGTGTGTCCCACGATGGGGGCGTGTTATCAAATGAGAGCTGTGATCCTTTGAAGAAGCCAAAGCA
T
TACATTGACTTTTGCACACTGACACAGTGCAGTTAA


Translation (968 aa):
MQPKVPLGSRKQKPCSDMGDVQRAARSRGSLSAHMLLLLLASITMLLCARGAHGRPTEEDEELVLPSLER
A
PGHDSTTTRLRLDAFGQQLHLKLQPDSGFLAPGFTLQTVGRSPGSEAQHLDPTGDLAHCFYSGTVNGDP
G
SAAALSLCEGVRGAFYLQGEEFFIQPAPGVATERLAPAVPEEESSARPQFHILRRRRRGSGGAKCGVMD
D
ETLPTSDSRPESQNTRNQWPVRDPTPQDAGKPS
GPGSIRKKRFVSSPRYVETMLVADQSMADFHGSGLK
H
YLLTLFSVAARFYKHPSIRNSISLVVVKILVIYEEQKGPEVTSNAALTLRNFCSWQKQHNSPSDRDPEH
Y
DTAILFTRQ
DLCGSHTCDTLGMADVGTVCDPSRSCSVIEDDGLQAAFTTAHELGHVFNMPHDDAKHCAS
L
NGVSGDSHLMASMLSSLDHSQPWSPCSAYMVTSFLDNGH
GECLMDKPQNPIKLPSDLPGTLYDANRQCQ
F
TFGEESKHCPDAASTCTTLWCTGTSGGLLVCQTKHFPWADGTSCGEGKWCVSGKCVNKTDMKHFA
TPVH
G
SWGPWGPWGDCSRTCGGGVQYTMRECDNPVPKNGGKYCEGKRVRYRSCNIEDCPDNN
GKTFREEQCEAH
N
EFSKASFGNEPTVEWTPKYAGVSPKDRCKLTCEAKGIGYFFVLQPK
VVDGTPCSPDSTSVCVQGQCVKA
G
CDRIIDSKKKFDKCGVCGGNGSTCKKMSGIVTST
RPGYHDIVTIPAGATNIEVKHRNQRGSRNNGSFLA
I
RAADGTYILNGNFTLSTLEQDLTYKGTVLRYSGSSAALERIRSFSPLKEPLTIQVLMVGHALRPKIKFT
Y
FMKKKTESFNAIPTFSEWVIEEWGECSKTCGSGWQRRVVQCRDINGHPASECAKEVKPASTRPCADLPC
P
HWQVGDWSPCSKTCGKGYKKRTLKCVSHDGGVLSNESCDPLKKPKHYIDFCTLTQCS




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser