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Report for CCDS49043.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49043.1 Public Mus musculus 12 Tmem18 23 108 98 CCDS HistoryNCBI Gene:211986Re-query CCDS DB by CCDS ID:49043.1Re-query CCDS DB by GeneID:211986See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49043.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057151.9 ENSMUSP00000050729.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057151.9Link to Ensembl Protein Viewer:ENSMUSP00000050729.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000057151Re-query CCDS DB by Protein ID:ENSMUSP00000050729
Original member Current member NCBI NM_172049.2 NP_742046.2 Accepted alive Link to Nucleotide Sequence:NM_172049.2Link to Protein Sequence:NP_742046.2Re-query CCDS DB by Nucleotide ID:NM_172049Re-query CCDS DB by Protein ID:NP_742046Link to BLAST:NP_742046.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_742046.2 140 Q3TUD9 140 100% 0 0

Chromosomal Locations for CCDS 49043.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 30584506 30584562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30585470 30585590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30587200 30587254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30588474 30588567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30588652 30588747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (423 nt):
ATGTCGTCCGCATACTCAGTCCGATCCTTCCCAGTCAGCATCCCTGCGGTGATCATGGAGACAGACTGGA
CAGAGCCGTGGCTCCTAGGACTCCTTGCCTTCCACCTGCTGTGCCTCCTTCTCACTTGCTTCTCCTCACA
GAGGTATAAGCTACAGATCGGGCACTTCCTGTGTCTGGTAGTGTTAGTCTATAGTGCCGAGTACATCAAC
GAAGTGGCTGCAGTGAACTGGAGATTGTTCTCAAAGTACCAGTACTTTGACTCCCGGGGGATGTTCATTT
CTCTTGTGTTCTCAGCGCCACTGCTCTTCAACGCCATGCTCATTGTGATTATGTGGGTACGGAAGACTTT
GACTGTGATGACCGACCTGAAGACCTTACAAGAGGAAAGAAAGGAGAGGAGGAGGAGGAGGAAGGAAGAG
TAA

Translation (140 aa):
MSSAYSVRSFPVSIPAVIMETDWTEPWLLGLLAFHLLCLLLTCFSSQRYKLQIGHFLCLVVLVYSAEYIN
EVAAVNWRLFSKYQYFDSRGMFISLVFSAPLLFNAMLIVIMWVRKTLTVMTDLKTLQEERKERRRRRKEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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